Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K11
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.39 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   4.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +2

Query: 629 PPXAPPXLVF-SQGPPPLTKXXQXXXXLKGGQPPXEFXXXXXLPPXXPPXPPXLXPXP 799
           PP APP L   +   PPL         L  G P         LPP  P  PP   P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP-----PLPPAAPAPPPAPAPAP 484


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
 Frame = +2

Query: 554 SXXPPNXGXPPXXKIXAXGPXXXHNPPXAPPXLVFSQGPPPLTKXXQXXXXLKGGQPPXE 733
           S  PP+   PP  +     P      P  PP    S  P P              QP   
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180

Query: 734 FXXXXX---LPPXXPPXPPXLXPXP 799
                    LP   PP PP + P P
Sbjct: 181 VKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 4.4
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 563 PPNXGXPPXXKIXAXGPXXXHNPPXAPP 646
           PP    PP     A      +NPP  PP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPP 194



 Score = 21.8 bits (44), Expect(2) = 4.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 752 LPPXXPPXPPXLXP 793
           LP   PP PP L P
Sbjct: 235 LPAPPPPPPPTLPP 248


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
 Frame = +2

Query: 626 NPPXAPPXLVFSQGPPPLTKXXQXXXXLKGG--QPPXEFXXXXXLPPXXPPXPP 781
           +PP  PP ++    P P          + GG   PP         PP  PP PP
Sbjct: 731 SPPPPPPAVIVPT-PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,159
Number of Sequences: 5004
Number of extensions: 17397
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)