Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K05
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    27   4.6  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.6  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    26   6.0  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   6.0  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    26   6.0  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    26   8.0  

>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 528 RYRRHASEDQEELRHYDEHFLIPRDIF 608
           RY+R ASE  E L  +  HF I   +F
Sbjct: 99  RYKRDASESDELLNEFSNHFGISDPLF 125


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +3

Query: 282 LPSKIDDVQLDPN--RRYVRSVTNPENNEASIEHSHHTVDTGLDQPIESHRNTRDLRFLY 455
           LP + +   L+ N  R Y    TN  +N  +   +     + L    ES  N      +Y
Sbjct: 395 LPGEANFQSLNQNNVRNYPFYQTNQGSNPPAKRFTQEPPSSSLYSLSESSINYSTQSPMY 454

Query: 456 PRGKLPVPTLPPFNPKPIYID 518
                P P+ PPF+  PIY D
Sbjct: 455 YNYNYPQPSFPPFH--PIYND 473


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 31/116 (26%), Positives = 47/116 (40%)
 Frame = +1

Query: 307 SSIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLFQRF 486
           SSI    +     I + T R ++I ++ L ++LTS S     + T     L G  LF   
Sbjct: 326 SSISFAALTLFGLIPEFTNRRMDIALVGLAINLTSGSLIAFAKPT--HAQLAGYWLF--- 380

Query: 487 LRLTPSQYILIWETVTDDMRRRIKKNCGIMMSTF*FRGTFSKNRESSETKDSECAP 654
             ++P  YI I   ++ +     KK   + MS     G    N    +T  S  AP
Sbjct: 381 -GISPIPYICILSCISSNSAGHTKK---VFMSAVSMIGYCVGNMVGPQTFRSTQAP 432


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
 Frame = -2

Query: 361 SLFSGLVTLRTYLRFGSSCTSSIFEGRIGWSAVLGAXRNIVTL--DTAIAVPGQLVALYV 188
           S+ +G++ L   +       +   +GRI    +     ++     D  IAVPG L+ +  
Sbjct: 262 SILTGVLRLNDEIEIRPGIVTKDDDGRIRCQPIFSRIISLFAEHNDLKIAVPGGLIGVGT 321

Query: 187 LSGAVLAVACRSAG*TSGTK---PEQRTAPELN 98
                L  A R  G   G+K   PE  T  E+N
Sbjct: 322 TVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/85 (25%), Positives = 34/85 (40%)
 Frame = +3

Query: 255 APSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDTGLDQPIESHRNT 434
           AP      + P  +D   L P  +  R V N   + + I  SH      +DQ  +   NT
Sbjct: 90  APRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSH------VDQISDIKHNT 143

Query: 435 RDLRFLYPRGKLPVPTLPPFNPKPI 509
            ++          +PT P  NP+P+
Sbjct: 144 SEI------SSTMIPTTPSKNPEPV 162


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -2

Query: 373 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGA 254
           S + SLFS       R   RF        F G++GW  +LG+
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGS 388


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 702 VLXKIHSNYSGRVKLNNVGTXVYIXFE 782
           V  + HS+Y+GR  L NV    Y  FE
Sbjct: 27  VSTRSHSSYTGRNSLRNVPAVNYAAFE 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,019
Number of Sequences: 5004
Number of extensions: 69892
Number of successful extensions: 228
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)