Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K05
         (866 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)               30   2.1  
SB_16535| Best HMM Match : ShTK (HMM E-Value=2.2e-18)                  30   2.1  
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)            30   2.8  
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    29   3.7  
SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)            29   3.7  
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 29   3.7  
SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)                      29   3.7  
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)                   29   3.7  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  29   3.7  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         29   4.9  
SB_12928| Best HMM Match : Sulfotransfer_1 (HMM E-Value=9.3e-10)       29   4.9  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 29   6.5  
SB_8542| Best HMM Match : PT (HMM E-Value=4)                           29   6.5  
SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)                      28   8.6  
SB_19358| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 224 HSGSWPACRTVRVIGRCVGGGL*VG 150
           H GSW +CR + ++  C GGGL +G
Sbjct: 122 HVGSWGSCRVLGIMSGC-GGGLRIG 145


>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
          Length = 473

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 345 NPENNEASIEHSHHTVDTGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMG 524
           +PEN++    +  H V + L  P  +  +TR     +P   LP P+LP   P  I  D  
Sbjct: 24  SPENSDTLYHYCRHLVPS-LPTPGTTTADTRHHHCRHPAPSLPAPSLPA--PGTITADTW 80

Query: 525 NRYRRH 542
             + RH
Sbjct: 81  YHHCRH 86


>SB_16535| Best HMM Match : ShTK (HMM E-Value=2.2e-18)
          Length = 101

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 227 CIKGDNVPRCAKYCRPSDSSFENRRRAARSKPKVCSQC 340
           C+ GDN P CAK+    + S  N R   ++  + C++C
Sbjct: 65  CVCGDNNPECAKWATQGECS-RNARFMHQNCKRSCNKC 101


>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
          Length = 820

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 453 YPRGKLPVPTLPPFNPKPIYIDMGNRYRRHASEDQEELRHY 575
           YP G L     P  NP+P Y   GN   R+ +    + R+Y
Sbjct: 378 YPSGNLQSRYYPSGNPQPRYYPSGNPQPRYYTSGNPQPRYY 418



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 453 YPRGKLPVPTLPPFNPKPIYIDMGNRYRRHASEDQEELRHY 575
           YP G L     P  NP+P Y   GN   R+      + R+Y
Sbjct: 198 YPSGNLQSRYYPSGNPQPRYYPSGNPQSRYYPSGNLQSRYY 238


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 255 APSTADHPI--LPSKIDDV--QLDPNRRYVRSVTNPENNEASIEHS-HHTVDTGLDQPIE 419
           A   ADH I  +  K+D    QLD N +Y++ + NP+  +  ++      V    +  +E
Sbjct: 258 AKVAADHLISEVKDKLDIAKEQLDDNAKYIKCLENPDEADKYVKQKIQQRVKRTAENLVE 317

Query: 420 SHR 428
           SHR
Sbjct: 318 SHR 320


>SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)
          Length = 618

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 453 YPRGKLPVPTLPPFNPKPIYIDMGNRYRRHASEDQEELRHY 575
           YP G L     P  NP+P Y   GN   R+      + R+Y
Sbjct: 51  YPSGNLQSRYYPSGNPQPRYYPSGNPQSRYYPSGNPQPRYY 91


>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
 Frame = +3

Query: 315 PNRRYVRSVTNPENNEASIEHSHHTVDTGLDQPIESHRNTRDLRFLYPRGKLPVPTLP-- 488
           P+ RY R ++ P   +  ++H    +D     P E +R+    R  Y R  LP P  P  
Sbjct: 193 PHERYGRPLSPPRRGDPYLDHYDRPLDP--YPPRERYRDEPPPRDAYGRHDLPPPRDPYD 250

Query: 489 -----PFNPKPIYIDMGNRYRRHASEDQEELRHYDEHFLIPRD 602
                P+   P Y D  +  R     D +  R YD++   PRD
Sbjct: 251 RERRDPYERDP-YYDHRDDPRDDPRRD-DPYRRYDDY---PRD 288


>SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)
          Length = 425

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = +2

Query: 197 CDKLARNRYGCIKGDNVPRCAKYCRPSDSSFEN--RRRAARSKPKV 328
           CD L    Y C K DN P   K+    D       RR     KPKV
Sbjct: 21  CDNLVTKSYSCYKKDNAPEKIKHLFDGDVKVIKVCRRCLPYKKPKV 66


>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
          Length = 1487

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 255 APSTADHPI--LPSKIDDV--QLDPNRRYVRSVTNPENNEASIEHS-HHTVDTGLDQPIE 419
           A   ADH I  +  K+D    QLD N +Y++ + NP+  +  ++      V    +  +E
Sbjct: 234 AKVAADHLISEVKDKLDIAKEQLDDNAKYIKCLENPDEADKYVKQKIQQRVKRTAENLVE 293

Query: 420 SHR 428
           SHR
Sbjct: 294 SHR 296


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = +2

Query: 197 CDKLARNRYGCIKGDNVPRCAKYCRPSDSSFEN--RRRAARSKPKV 328
           CD L    Y C K DN P   K+    D       RR     KPKV
Sbjct: 397 CDNLVTKSYSCYKKDNAPEKIKHLFDGDVKVIKVCRRCLPYKKPKV 442


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 188 HVQCDKLARNRYGCIKGDNVPR--CAKYCRPSDSSFENRRRAARSKPKVC 331
           H QCD L  N+  C+ G  +P+  C KYC P +              KVC
Sbjct: 191 HYQCD-LHGNKV-CLPGWYIPQGNCIKYCVPQNDDIRGHYSCDSKGNKVC 238


>SB_12928| Best HMM Match : Sulfotransfer_1 (HMM E-Value=9.3e-10)
          Length = 221

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +3

Query: 291 KIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDT--GLDQP--IESHRNTRDLRFLYP 458
           KID+ Q+D   +++ ++  P +  A+ +  +  + T  GL +P  +++H N + +     
Sbjct: 78  KIDETQIDKKVKFLDTMFIPAD-PANPKTPNDVIKTFQGLPRPRLLKTHLNYQYVPMGED 136

Query: 459 RGKLPVPTLPPFNPKPIYIDMGNRY 533
           RG  P   +   NPK  ++   N Y
Sbjct: 137 RGSAPKTIVVMRNPKDAFVSYFNHY 161


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 168  ANTAPDNTYSATSWPGTAMAVSRVTMFLXAPSTADHP 278
            A  +P   +  T+WP T   ++ V     APST   P
Sbjct: 1377 AKPSPSRKHQTTTWPQTTQEMAAVQQTTEAPSTTAPP 1413


>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +1

Query: 289 RKSTTCSSIQTEGMFAVSPIQKITRRPLN--IH-IIQLILDLTSRSRATVTQGTCGFCTL 459
           RK++T SS  +    A  P Q +   P +  +H I+ L+L LTS  + T++QG+  + + 
Sbjct: 297 RKASTASSHSSSFRLAKKP-QHVCSNPPSCLLHSIVALLLCLTSDGQLTLSQGSANWSSA 355

Query: 460 EGNC 471
             +C
Sbjct: 356 LQSC 359


>SB_8542| Best HMM Match : PT (HMM E-Value=4)
          Length = 650

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 453 YPRGKLPVPTLPPF-NPKPIYIDMGNRYRRHASEDQEELRHY 575
           YP G  P P+  PF NP+P Y   GN   ++      + R+Y
Sbjct: 297 YPSGN-PQPSYYPFGNPQPRYYPYGNPQPKYYPSGNPQSRYY 337


>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 1743

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +1

Query: 430 TQGTCGFCTLEGNCLFQRFLRLTPSQ 507
           T GTC F  + G  LF R LRL PSQ
Sbjct: 230 TSGTCVFLFIFG-ILFDRHLRLRPSQ 254


>SB_19358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 295 STTCSSIQTEGMFAVSPIQK 354
           STTCS++ T G +A++P +K
Sbjct: 89  STTCSAVTTVGGYAITPFRK 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,326,540
Number of Sequences: 59808
Number of extensions: 536664
Number of successful extensions: 1584
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)