Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K05
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    28   7.5  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    28   7.5  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    28   7.5  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    28   7.5  
AC006742-8|ABB51175.1|  261|Caenorhabditis elegans Hypothetical ...    28   9.9  
AC006742-2|AAF60497.3|  261|Caenorhabditis elegans Hypothetical ...    28   9.9  

>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +3

Query: 273 HPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDTGLDQPIESHRNTRDLR-- 446
           HP  PS    +     RR  RS  +PE+ E+  E S  T+++G ++     R  R L   
Sbjct: 100 HPGRPSSSATISNSARRRRYRSCNSPEHLES--ESSQLTLESGSEEFRSLPRYIRQLNQR 157

Query: 447 -FLYPRGKLP---VPTLPPFNPKPIYI 515
            F  P   +    +P    FN  P YI
Sbjct: 158 DFGSPSNSITNGYIPDSVDFNSLPRYI 184


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 153 DLQATANTAPDNTYSATSWPGTAMAVSRVTMFLXAPSTADHPILPSKIDDVQLDPNRRYV 332
           ++Q     +P+  Y     P     +SR  ++L  P T+DH  +PS  D   +D  +++V
Sbjct: 259 NIQMWVQDSPNKLYFMRR-PDKYAFISRPELYLLTPKTSDHMEIPSG-DQWTIDVKQKFV 316


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 153 DLQATANTAPDNTYSATSWPGTAMAVSRVTMFLXAPSTADHPILPSKIDDVQLDPNRRYV 332
           ++Q     +P+  Y     P     +SR  ++L  P T+DH  +PS  D   +D  +++V
Sbjct: 276 NIQMWVQDSPNKLYFMRR-PDKYAFISRPELYLLTPKTSDHMEIPSG-DQWTIDVKQKFV 333


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 153 DLQATANTAPDNTYSATSWPGTAMAVSRVTMFLXAPSTADHPILPSKIDDVQLDPNRRYV 332
           ++Q     +P+  Y     P     +SR  ++L  P T+DH  +PS  D   +D  +++V
Sbjct: 388 NIQMWVQDSPNKLYFMRR-PDKYAFISRPELYLLTPKTSDHMEIPSG-DQWTIDVKQKFV 445


>AC006742-8|ABB51175.1|  261|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.1 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
 Frame = +3

Query: 384 HTVDTGLDQ--PIESHRNTRDLRFLYPRGK-------LPVPTLPPFNPKPIYIDMGNRYR 536
           H + T LD   P + H       F  PRG        L  PT+  FN   + +D      
Sbjct: 111 HNMRTLLDNYSPTKHHYLGLQWNFFTPRGFNDGSSYILSRPTMEAFNE--VMLDPDRCPD 168

Query: 537 RHASEDQEELRHYDEHFLI-PRDIFQE*GKFRNQRF 641
            H +E+ +EL     H  I P DI  E G  R Q F
Sbjct: 169 HHRAEEDQELAKCLAHMEIYPEDIRDEMGSERIQHF 204


>AC006742-2|AAF60497.3|  261|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.5 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
 Frame = +3

Query: 384 HTVDTGLDQ--PIESHRNTRDLRFLYPRGK-------LPVPTLPPFNPKPIYIDMGNRYR 536
           H + T LD   P + H       F  PRG        L  PT+  FN   + +D      
Sbjct: 111 HNMRTLLDNYSPTKHHYLGLQWNFFTPRGFNDGSSYILSRPTMEAFNE--VMLDPDRCPD 168

Query: 537 RHASEDQEELRHYDEHFLI-PRDIFQE*GKFRNQRF 641
            H +E+ +EL     H  I P DI  E G  R Q F
Sbjct: 169 HHRAEEDQELAKCLAHMEIYPEDIRDEMGSERIQHF 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,060,327
Number of Sequences: 27780
Number of extensions: 403759
Number of successful extensions: 1155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)