Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K05
         (866 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    31   1.00 
At5g61240.1 68418.m07681 leucine-rich repeat family protein cont...    31   1.3  
At2g32730.1 68415.m04005 26S proteasome regulatory subunit, puta...    30   2.3  
At5g48385.1 68418.m05980 expressed protein                             29   3.0  
At2g07880.1 68415.m01007 hypothetical protein                          29   3.0  
At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase...    29   4.0  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    29   4.0  
At2g35035.1 68415.m04298 urease accessory family protein (URED) ...    28   7.0  
At2g46550.1 68415.m05807 expressed protein                             28   9.3  

>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 14/63 (22%), Positives = 34/63 (53%)
 Frame = +3

Query: 249 LXAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDTGLDQPIESHR 428
           L +   A+  +   KID  ++D  ++ + +++  E+  +  + + ++ D G  + +ESH 
Sbjct: 96  LTSGEKANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDAGDFKGVESHS 155

Query: 429 NTR 437
           NT+
Sbjct: 156 NTQ 158


>At5g61240.1 68418.m07681 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 380

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 560 FLILRRMSSVTVSHINIYWLGVKRRKRWNR 471
           +L    MSS  + H+NIY + + R  RWN+
Sbjct: 157 YLCHHNMSSFQILHLNIYSVVITRNLRWNK 186


>At2g32730.1 68415.m04005 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1004

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 191 VQCDKLARNRYGCIKGDNVPRCAKYCRPSDSSFENRR 301
           ++C +L +     IK DNV     YC     SF NRR
Sbjct: 159 IECRRLDKLEEAIIKSDNVQGTLSYCINVSHSFVNRR 195


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -3

Query: 462 LEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW*HCE-HTFGLDRAARRRFSK 286
           +E T++   L    S    Q+Q    ++  Q      L W   E H  GL+R+ +RRF +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 285 EESDGLQY 262
            E    +Y
Sbjct: 61  LEDQEKEY 68


>At2g07880.1 68415.m01007 hypothetical protein
          Length = 173

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +3

Query: 369 IEHSHHTVDTGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMGNRYRRHAS 548
           +E+ HH     LDQ +  H     L F  P    P   LPP + +PI +  G R   H S
Sbjct: 63  VEYHHHH---SLDQSLYQHGRVPPLSFTRPITLPPSRVLPPPSTRPITLPHG-RVPYHHS 118

Query: 549 ED 554
            D
Sbjct: 119 LD 120


>At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase (PG1) GI:5669846,
           (PG2) GI:5669848 [Glycine max]; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 470

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 188 HVQCDKLARNRYGCIKGDNVPRCAKYC-RPSDSSFENRRRAARSKPKVC 331
           H Q   L  N YG  +G  VP    YC R S+      ++ +RS  K+C
Sbjct: 420 HQQQQALCWNSYGKTQGPLVPSSIGYCLRKSNIGGYYSQKVSRSYDKIC 468


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 600 PSESESAHHNAAILLDPPTHVVGNGFPY 517
           PS  ESAHH    LL+  + V+G   PY
Sbjct: 318 PSPIESAHHGDRFLLEKDSSVLGTEDPY 345


>At2g35035.1 68415.m04298 urease accessory family protein (URED)
           contains Pfam profile: PF01774 urease accessory protein
           UreD
          Length = 294

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -2

Query: 334 RTYLRFGSSCTSSIFEGRIGWSAVLGAXRNIVT-LDTAIAVPGQLVALYVLSGAVLAVAC 158
           + Y   GS C+  I E RIG  A+L    + VT   TA     Q+  L   S  VL    
Sbjct: 80  KVYKAIGSKCSEQILEARIGSEALLVVIPDPVTCFSTARYYQKQIFRLLSDSNLVLVDWI 139

Query: 157 RSAG*TSGTK 128
            S    +G K
Sbjct: 140 TSGRHANGEK 149


>At2g46550.1 68415.m05807 expressed protein
          Length = 397

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/94 (24%), Positives = 33/94 (35%)
 Frame = +3

Query: 156 LQATANTAPDNTYSATSWPGTAMAVSRVTMFLXAPSTADHPILPSKIDDVQLDPNRRYVR 335
           +Q  A  AP  TY  +S   TA +  +V +   +P  +  P   S        P      
Sbjct: 19  VQEDAKRAPKLTYCQSSSSSTASSTKQVEVSGSSPRVSVEPRTQSSCAGFMPLPRNPNFP 78

Query: 336 SVTNPENNEASIEHSHHTVDTGLDQPIESHRNTR 437
            +  P N      H HH       QP+E   N +
Sbjct: 79  DLL-PHNTRLW-SHPHHQFQVNKKQPLEDEVNNQ 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,806,655
Number of Sequences: 28952
Number of extensions: 371967
Number of successful extensions: 1019
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)