Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K04
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.1  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 660 PDTCPPFSPSGSVALSHSSRCXYLSS 737
           P + P FSPS SV+   +S   Y+SS
Sbjct: 163 PSSTPVFSPSASVSSKVASSVSYVSS 188


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 580  PTGL*RYQAFPPWKLPXALSCSDPAAYRIPVRXSPLREAW 699
            P  L  Y+ +   KL    S +D  + ++PV    LR AW
Sbjct: 1080 PIKLNPYEKYDKPKLDVVASAADITSKKLPVNQEILRNAW 1119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,191
Number of Sequences: 5004
Number of extensions: 62759
Number of successful extensions: 157
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)