Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_K04
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0609 + 5443780-5443875,5444540-5445136,5448792-5448881,544... 32 0.69
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 31 0.91
01_06_0826 - 32252546-32253208 31 0.91
03_06_0711 - 35682293-35682952 31 1.2
07_01_1201 - 11419851-11419913,11420090-11420311 30 2.8
09_04_0748 + 19901687-19902460 29 4.9
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.4
12_02_0628 + 21357876-21359921 28 8.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.5
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616... 28 8.5
07_03_0008 + 12303536-12303893,12303910-12304176,12304635-123049... 28 8.5
04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042 28 8.5
>05_01_0609 +
5443780-5443875,5444540-5445136,5448792-5448881,
5449615-5450121
Length = 429
Score = 31.9 bits (69), Expect = 0.69
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +3
Query: 630 CALLFRPCRLPDTCPPFSPS-GSVALSHSSRCXYLSSVXVVRSKLGCVPEXPR--SARPX 800
C L + RLP T PP +P+ GS+ + +SRC V L P P A
Sbjct: 135 CLLELQHRRLPSTAPPLTPTLGSICM--ASRCALRRRPHSVAGPLRSAPSSPAVDPATSS 192
Query: 801 XPYPVTIVLXXTR*XRLFA 857
+P+ ++L ++ RL A
Sbjct: 193 GLHPIYLLLRGSKETRLGA 211
>04_04_1358 + 32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 31.5 bits (68), Expect = 0.91
Identities = 23/89 (25%), Positives = 36/89 (40%)
Frame = +3
Query: 531 PGRASQKSTLKSEVAKPDRTIKIPGVSPLEAPSCALLFRPCRLPDTCPPFSPSGSVALSH 710
P S K L SE + K P + E+P+ + +L + PPF+P +++SH
Sbjct: 1429 PSHDSSKEVLSSEPEEIGNDEKAPDSNSDESPTESKKKGGSKLSASAPPFNPGSLLSMSH 1488
Query: 711 SSRCXYLSSVXVVRSKLGCVPEXPRSARP 797
+ VV L +P P P
Sbjct: 1489 PYSTVAIYDASVV---LQPIPSQPMEILP 1514
>01_06_0826 - 32252546-32253208
Length = 220
Score = 31.5 bits (68), Expect = 0.91
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +3
Query: 567 EVAKPDRTIKIPGVSPLEAPSCALLFRPCRLPDTCPPFSPSGSVALSHSS 716
EV+KP R + G L PS L C+ PP SP+G A S SS
Sbjct: 5 EVSKPSRRLSPKGSFKLSLPSL-LACGQCKATAVSPPESPTGVGARSFSS 53
>03_06_0711 - 35682293-35682952
Length = 219
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 528 PPGRASQKST-LKSEVAKPDRTIKIPGVSPLEAPSCALLFRPCRLPDTCPPFSPSGSVAL 704
PP A ST E P P P EA S A P P+T P +PS S +
Sbjct: 32 PPASAPTASTPAADERLHPADAALAPSQPPSEASSSAAALSPPAPPETSPLPAPSHSPPV 91
Query: 705 SHSS 716
HS+
Sbjct: 92 PHSA 95
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +1
Query: 565 QRWRN--PTGL*RYQAFPPWKLPXALSCSDPAAYRIPVR-XSPLREAWRFLIAHAVXISV 735
Q+WR+ PTG + +FP LP A PA R P P R A + + + +
Sbjct: 27 QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRVAEGLFGLNGIEVGI 86
Query: 736 RCXSFAP 756
+F P
Sbjct: 87 EGDNFTP 93
>09_04_0748 + 19901687-19902460
Length = 257
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 514 SIGSAPLDEHHKNRRSSQRWRNPTGL*RYQAFPPWKLPXA 633
S G+A LD+ ++ S R P + Y AF PW P A
Sbjct: 101 SAGAATLDKLLRDEASDSGGRRPVRVLVYDAFLPWGRPVA 140
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 334 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 489
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>12_02_0628 + 21357876-21359921
Length = 681
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 781 GXSGTQPSLERTTYTELRYXQREL*ESATLPEGEXGGQVSGKRQGRN 641
G +G P R T + Y + ESA +P G G V+G +N
Sbjct: 533 GEAGYDPFSRRWTRSRNYYAAKPEGESAEVPNGNDGSAVAGDEDTKN 579
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 283 NESAN---ARGEAVCVLGALPLPRSLTRCAR 366
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>07_03_0697 +
20759176-20759817,20760592-20760708,20761422-20761696,
20761906-20762068,20762293-20762421,20762989-20763713,
20763853-20764081
Length = 759
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 508 RFSIGSAPLDEHHKNRRSSQRWRNP 582
RFS SAP+D+H + RR NP
Sbjct: 132 RFSSSSAPVDKHGRRRRKKGGRENP 156
>07_03_0008 +
12303536-12303893,12303910-12304176,12304635-12304951,
12304975-12305819,12305859-12306069
Length = 665
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 527 PPWTSITKIDAQVRGGETRQDYKDTRRFPPGSSLXRS 637
P WT + + DA V ++ D + + PP S + RS
Sbjct: 573 PGWTKVLQYDAGVSTWQSASDNRCSSGLPPASRMRRS 609
>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
Length = 360
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 524 PPPWTSITKIDAQVRGGETRQDYKDTRRFPPGSSLXRSPVPT 649
PPPW + + R R+ RR PPGSS V T
Sbjct: 51 PPPWRPSSSPISAERSRRQRRRLPPPRRAPPGSSTRGMAVGT 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,012,739
Number of Sequences: 37544
Number of extensions: 512081
Number of successful extensions: 1496
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -