Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K04
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27870.1 68418.m03343 pectinesterase family protein similar t...    29   3.1  
At4g29910.1 68417.m04256 origin recognition complex subunit 5-re...    29   4.1  
At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   4.1  
At3g10680.1 68416.m01284 heat shock protein-related contains wea...    29   4.1  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.4  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.4  
At4g11280.1 68417.m01824 1-aminocyclopropane-1-carboxylate synth...    28   7.1  
At3g56150.1 68416.m06241 eukaryotic translation initiation facto...    28   7.1  
At3g28790.1 68416.m03593 expressed protein                             28   7.1  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.1  
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    28   9.4  

>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
 Frame = +3

Query: 528 PPGRASQKSTLKSEVAKPDRTIKI-PGVSPLEAPSCALLFRPCRLPDTCPPFSPSGSVAL 704
           P G     S   S V  P  +    P  SP  +PS      P   P   P  SPS S + 
Sbjct: 666 PAGHLGSPSDTPSSVVTPSASPSTSPSASPSVSPSAFPSASPSASPSASPSVSPSASPSA 725

Query: 705 SHSS 716
           S  S
Sbjct: 726 SPQS 729


>At4g29910.1 68417.m04256 origin recognition complex subunit
           5-related (ORC5) contains weak similarity to Origin
           recognition complex subunit 5 (Swiss-Prot:Q9WUV0) [Mus
           musculus]
          Length = 534

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 537 RASQKSTLKSEVAKPDRTIKIPGVSPLE 620
           +AS+KS  K E+A+ +  +K PG  PLE
Sbjct: 412 KASEKSMEKKEIAEQEAVMKGPGSFPLE 439


>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 472 KRPGTVKRPRCWRFSIGSAPLDEHHKNRRSSQR 570
           K+P  V+R    +FS+G  PL   +  RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270


>At3g10680.1 68416.m01284 heat shock protein-related contains weak
           similarity to Pfam profile PF00011: Hsp20/alpha
           crystallin family
          Length = 490

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 585 RTIKIPGVSPLEAPSCALLFRPCRLPDTC 671
           RT++I G  PL A + A      R+PDTC
Sbjct: 62  RTVQIQGQRPLSAQTKARFSEAYRVPDTC 90


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 334  PLPRSLTRCARSFGCGERYQLTQRR 408
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 334  PLPRSLTRCARSFGCGERYQLTQRR 408
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At4g11280.1 68417.m01824 1-aminocyclopropane-1-carboxylate synthase
           6 /  ACC synthase 6  (ACS6) identical to GI:3746125
          Length = 495

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 581 RQDYKDTRRFPPGSSLXRSPVPTLPL 658
           R  + DTRRF  G     SPVP  PL
Sbjct: 465 RLSFSDTRRFDDGFFSPHSPVPPSPL 490


>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
           subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
           identical to SP|O49160 Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
           {Arabidopsis thaliana}
          Length = 900

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 657 SGRVGTGERXRELPGGKRLVSL 592
           +GRVG+G R  ++ G  R+VSL
Sbjct: 873 AGRVGSGNRGMQMDGSSRMVSL 894


>At3g28790.1 68416.m03593 expressed protein 
          Length = 608

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 560 QVRGGETRQDYKDTRRFPPGSSLXRSPVPTLPLTGYLSAXLP 685
           +V GG +   YKDT     G+S   SP PT P T   S   P
Sbjct: 253 EVSGGSSGNTYKDTTGSSSGASPSGSPTPT-PSTPTPSTPTP 293


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 325 PIRKPPLPARWPIH*CRKNLPHL 257
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 472 KRPGTVKRPRCWRFSIGSAPLDEHHKNRRSSQR 570
           K+P  V+R    +FS+G  PL   +  R++S+R
Sbjct: 226 KKPDYVQRVEIKQFSLGDEPLSVRNVERKTSRR 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,407,243
Number of Sequences: 28952
Number of extensions: 366014
Number of successful extensions: 941
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)