Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K03
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    30   0.56 
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    27   3.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   5.2  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   6.9  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   6.9  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   6.9  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   9.1  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   9.1  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 242 LRDSHSPARPFEGNTELNVHLSGIFSFGKCCPV 144
           +RD H PA  F+  TEL  HL   FS G+C  V
Sbjct: 84  VRD-HDPAAAFKQQTELAQHLYREFSSGRCTGV 115


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +2

Query: 122 LWQLSVTSPGNIFQTRKCPKGEHSVLYCPQMAEPDCENPEVTISLTTVGPCDVPQLLLRP 301
           L +L+   PG I   R   KG      C   A  D    ++ I+   +G C V  + LRP
Sbjct: 395 LEELARKHPGKINNLRGKGKGTFIAWDCESPAARDKFCADMRINGVNIGGCGVAAIRLRP 454

Query: 302 A*MF 313
             +F
Sbjct: 455 MLVF 458


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 463 FXFFFFXFXFFFFXXSTTNRHF*FYLHV 380
           F FFF+   F FF    T+ HF F+  +
Sbjct: 108 FCFFFYFSLFSFFSFLFTSLHFNFFFRL 135


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +3

Query: 285 SCFCDRPKCSEHENWQM 335
           +CF ++ +C++H +WQ+
Sbjct: 346 TCFTEKRRCAKHTSWQV 362


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 359 LTIQNSGTHLPVFVFRTFRPVAEATVVRR 273
           + + N    LP++V + FRP  + +++RR
Sbjct: 255 IRVINDRNKLPIYVAKVFRPPLDTSLLRR 283


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 80  RTLANEKFYCICCLLWQLSVTSPGNIFQTR 169
           R LA E+ Y IC  +++ +V +P  I+QT+
Sbjct: 102 RNLAIEEGYSICMDMYRKNVLAPLQIWQTK 131


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 355 QFRIPVHICQFSCSEHLGRSQKQLWYVAWAHRGQR 251
           +F +P+  C+F  +  L + Q   W VA   R QR
Sbjct: 224 RFLLPIQQCEFQLTNILEQLQPDSWPVANDRRPQR 258


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 147 RATFSKRENARKVNIQFCI 203
           R T ++RE ARKV  +FCI
Sbjct: 337 RPTETEREYARKVTAEFCI 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,992
Number of Sequences: 5004
Number of extensions: 49504
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)