Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_K02
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.047
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.77 
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    23   8.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 348 PPPPXGGFXPXLXXAPPPPP 407
           PPPP  GF P     PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 349 PPPXXGVXXPXXXXPPPPPXXXPXRGXK 432
           PPP  G   P    PPPPP     R  K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 731 PXXFXXGGXPPPPPPXXXXKKK 796
           P  F     PPPPPP    KK+
Sbjct: 15  PPGFEPPSQPPPPPPPGYVKKR 36



 Score = 24.2 bits (50), Expect(2) = 0.79
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 757 PPPPPPXXXXXKKN 798
           PPPPPP     +KN
Sbjct: 25  PPPPPPGYVKKRKN 38



 Score = 23.0 bits (47), Expect(2) = 0.79
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 748 GGXPPPPPP 774
           G  PPPPPP
Sbjct: 7   GNPPPPPPP 15


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 348 PPPPXGGFXPXLXXAPPPPPXXPPXGGKK 434
           PPPP  G        PPPPP     GG +
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 333 PXFFXPPPPXGGFXPXLXXAPPPPPXXPP 419
           P    PPPP     P +  A PPPP  PP
Sbjct: 756 PIMGGPPPPPP--PPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = +3

Query: 348 PPPPXGGFXPXLXXAP-PPPPXXPPXGG 428
           PPPP     P    AP P PP  P  GG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGG 760



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 749 GGXPPPPPP 775
           GG PPPPPP
Sbjct: 759 GGPPPPPPP 767


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +2

Query: 338 FFXXPPPXGGFXXPXXKXPPPPPXXXPXGGXKXXGGG 448
           ++  PPP G    P        P   P GG    GGG
Sbjct: 96  YYAPPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGG 132


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 22.6 bits (46), Expect(2) = 8.3
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 393  PPPPPXXPPXGGKKXXGXXXFFFXKKXP 476
            PPPPP  P    KK      + F  + P
Sbjct: 1095 PPPPPPPPAEVEKKDLYLALYDFAGRSP 1122



 Score = 21.0 bits (42), Expect(2) = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 390  APPPPPXXPP 419
            A PPPP  PP
Sbjct: 1093 AVPPPPPPPP 1102


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 748 GGXPPPPPP 774
           GG PPPPPP
Sbjct: 303 GGLPPPPPP 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,835
Number of Sequences: 5004
Number of extensions: 24116
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)