Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J23
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   8.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   8.5  

>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -1

Query: 565 LIDLAATVFLE---KSIFWTSEMKTSPGNDCKNSRLVFHHH 452
           L DL  T  LE    +I W  + KT PG D    RL+   H
Sbjct: 40  LYDLVITHALEWPSLTIQWLPDKKTIPGTDYSIQRLILGTH 80


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 481 KNSRLVFHHHERILVSPILSSTPLID 404
           +N +  FHH E+  +  +LS++P ++
Sbjct: 326 RNQKFPFHHKEQQFLKDLLSASPYLE 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,568
Number of Sequences: 5004
Number of extensions: 64528
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)