Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J23
         (910 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      79   6e-15
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      60   3e-09
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      53   3e-07
SB_14255| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 1/203 (0%)
 Frame = +3

Query: 267 SVLPPLAQLALASDGETHEELLKAIGFPGRRCYTKQNSRVKAVXFRSIKGVELKMGETSI 446
           S++  LA   L + G T  ++ K   FP      K +  ++A+   +  G ++ M     
Sbjct: 36  SIVVALAMTYLGARGNTATQMTKTFHFP-TDVPEKFHDFLQALNASNSDGNQILMANRLF 94

Query: 447 RS*WWKTRREFLQSFPGDVFISDVQNIDFSKNTVAAK-SINDWGRXKYX*PH*GFS*SGL 623
               ++   EF ++   + F +++  +D+ KN+  A+ ++N W   K           G+
Sbjct: 95  AQMGFEILEEFKKASK-ESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNLIPEGM 153

Query: 624 AQLSHSGCSRHAIYFKGAWSSKFDERLTSDRDFYVSXDKTIKVPMMYKRXDYXYGXSAVL 803
                  C  +A+YFKG+W   F+   T    F  +  + I+V  MY+  ++ Y  S+ L
Sbjct: 154 FNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSSEFRYLESSTL 213

Query: 804 NAQLIEIPYXGDQSSLIVXLPKD 872
             Q++E+PY G++ S++V LP +
Sbjct: 214 GCQIVELPYAGEKLSMVVLLPNE 236


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 13/210 (6%)
 Frame = +3

Query: 282 LAQLALASDGETHEELLKAIGFPGRRCYTKQNSRVKAVXFRSIKGVELKMGETS-IRS*W 458
           L  + L S G T  ++    G+  +    ++  R       ++   +L  GE   +   W
Sbjct: 5   LGLVYLGSRGTTAIQIANIFGW--KESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIW 62

Query: 459 WKTRREFLQSF---PGDVFISDVQNIDF-SKNTVAAKSINDW------GRXKYX*PH*GF 608
                E L+ F     + + S++  +DF +K   A K +N W      G  K   PH   
Sbjct: 63  GHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPH--- 119

Query: 609 S*SGLAQLSHSGCSRHAIYFKGAWSSKFDERLTSDRDFYV--SXDKTIKVPMMYKRXDYX 782
              G+          +A+YFKG W  +F E  T    F+V  S +  I+V MM ++    
Sbjct: 120 ---GVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMKVN 176

Query: 783 YGXSAVLNAQLIEIPYXGDQSSLIVXLPKD 872
           +   A +  +++E+PY GD +++++ LP++
Sbjct: 177 FYYDADIKCRVVELPYSGDDTAMVIILPEE 206


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 22/73 (30%), Positives = 40/73 (54%)
 Frame = +3

Query: 654 HAIYFKGAWSSKFDERLTSDRDFYVSXDKTIKVPMMYKRXDYXYGXSAVLNAQLIEIPYX 833
           +AIYFKG W   F +  +   +F  +    ++V MM+++  + Y  S     +L+E+PY 
Sbjct: 127 NAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKFKYLHSDKYKCKLLELPYV 186

Query: 834 GDQSSLIVXLPKD 872
             Q S+++ LP +
Sbjct: 187 DTQLSMVLVLPDE 199


>SB_14255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 683 TPCSLEIDGVTRTAAVAELSESGLTKSL-MRLXVFXSTPIVNR 558
           TPC   + GVTRT   A L+   + K L  R     + P++N+
Sbjct: 31  TPCDAVLTGVTRTVFAATLAAESVRKVLKQRCFHCVTVPVINQ 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,814,088
Number of Sequences: 59808
Number of extensions: 466445
Number of successful extensions: 1099
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)