Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J23
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.72 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.7  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 560 RLSCDCILGEINILDVRN 507
           +L C+CIL   NILD  N
Sbjct: 60  QLYCECILKNFNILDKNN 77


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 480 LQSFPGDVFISD--VQNIDFSKNTVAAKSIND 569
           L S+ G + I+    QNID +KNT+     ND
Sbjct: 404 LDSYNGSMEINQNIAQNIDHAKNTIIDYRNND 435


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +3

Query: 663 YFKGAWSSKFDERLTSDRDFYVSXDKTIKVP 755
           +F+ +++++  +RLTS  + +V   K +++P
Sbjct: 78  HFESSFNAQSWQRLTSLHELHVHGCKVLRIP 108


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 487 RFQGTSSFRTSKILISPRIQSQLSLLTI 570
           R    ++FR SK+++   I S+ +++ I
Sbjct: 5   RLSNVATFRLSKVMLDHTINSKKTIMRI 32


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 502 SSFRTSKILISPRIQSQLSLLTI 570
           SS  TSK+++SPR+  + + L +
Sbjct: 270 SSVTTSKMMVSPRLYDRQNGLVL 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,677
Number of Sequences: 438
Number of extensions: 4207
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)