Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J22
         (875 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.1  
At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger) fa...    28   7.1  
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)...    28   7.1  
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)...    28   7.1  

>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 345 PIRKPPLPARWPIH*CRKNLPHL 277
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 235

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 218 LIMVTNKAIASQISQIKHFFHXILVXXWSKLH 123
           L++ T+     Q+S+ KH FH + +  W K H
Sbjct: 146 LMVFTDSDELRQLSECKHAFHVLCIETWLKDH 177


>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 159

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 717 RREKGGTGXXXXGXXXNRRGAGGXFPGGKR 628
           RRE GG      G   +R G GG + GG+R
Sbjct: 107 RREGGGGYSGGGGGYSSRGGGGGSYGGGRR 136


>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 176

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 717 RREKGGTGXXXXGXXXNRRGAGGXFPGGKR 628
           RRE GG      G   +R G GG + GG+R
Sbjct: 124 RREGGGGYSGGGGGYSSRGGGGGSYGGGRR 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,114,037
Number of Sequences: 28952
Number of extensions: 124544
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)