Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J21
         (965 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.060
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.18 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    22   9.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.060
 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
 Frame = +2

Query: 635 PXPPPPXXXXXXXXXXXPPPPPXKKXGG------XXGGGGXXXPPPPPP 763
           P PPP            P PPP    GG        G  G   PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 32.7 bits (71), Expect = 0.080
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +2

Query: 635 PXPPPPXXXXXXXXXXXPPPPPXKKXGGXXGGGGXXXPPPPPP 763
           P P P            PPPPP         G G   PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPG---VAGAGPPPPPPPPP 783



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 635 PXPPPPXXXXXXXXXXXPPPPPXKKXGG 718
           P PPPP           PPPPP    GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 635 PXPPPPXXXXXXXXXXXPPPPPXKKXGG 718
           P PPPP           PPPPP     G
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +2

Query: 641 PPPPXXXXXXXXXXXPPPPPXKKXGGXXGGGGXXXPPPP 757
           PPPP           PPPPP         GG     P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP--AVSAGGSRYYAPAP 797



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +2

Query: 635 PXPPPPXXXXXXXXXXXPPPPPXKKXGGXXGGGGXXXPPPP 757
           P PPPP           PPPP     G           P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 756 GGGGXXXPPPPXXPPXFXXGG 694
           G  G   PPPP  PP    GG
Sbjct: 769 GVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +2

Query: 686 PPPPPXKKXGG----XXGGGGXXXPPPPPPXK 769
           PPPPP ++  G      G      PPPPPP +
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344



 Score = 29.5 bits (63), Expect = 0.74
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = +2

Query: 686 PPPPPXKKXGGXXG--GGGXXXPPPPPP 763
           PPPPP     G       G   PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +2

Query: 686 PPPPPXKKXGGXXGGGGXXXPPPPPPXKK 772
           P PPP  +            PPPPPP  +
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSR 319



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 689 PPPPXKKXGGXXGGGGXXXPPPPPPXKK 772
           PPP  +             PPPPPP ++
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRR 320


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 635 PXPPPPXXXXXXXXXXXPPPPP 700
           P PPPP           PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 509 PAPPPPPXXFXPP 471
           P PPPPP  F PP
Sbjct: 9   PPPPPPPPGFEPP 21


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -3

Query: 759 GGGGGXXXPPPPXXPPXFXXGGGGGXXXXXXXXXXXGGGGXG 634
           GG GG    PPP        GG GG           GGG  G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 716 GXXGGGGXXXPPPPPP 763
           G    GG   PPPPPP
Sbjct: 298 GDSANGGLPPPPPPPP 313


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 509 PAPPPPPXXFXPP 471
           PAPPPPP    PP
Sbjct: 236 PAPPPPPPPTLPP 248


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 21.8 bits (44), Expect(2) = 9.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 520 FXXGPPPPPP 491
           F   PPPPPP
Sbjct: 944 FPPPPPPPPP 953



 Score = 21.8 bits (44), Expect(2) = 9.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 508 PPPPPPXXFFXPPXGG 461
           PPPPPP        GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,760
Number of Sequences: 5004
Number of extensions: 20852
Number of successful extensions: 256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)