Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J21
         (965 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.84 

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.1 bits (57), Expect = 0.84
 Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
 Frame = +2

Query: 605 FXXLXXXXXXPXPPPPXXXXXXXXXXXPP--PPPXKKXGGXXGGGGXXXPPPP 757
           F  L      P PPPP           PP  PPP    GG  GG     PP P
Sbjct: 573 FPNLPNAQPPPAPPPP-----------PPMGPPPSPLAGGPLGGPAGSRPPLP 614



 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 692 PPPXKKXGGXXGGGGXXXPPPPPP 763
           PP      G    GG   PPPPPP
Sbjct: 512 PPHGAGYDGRDLTGGPLGPPPPPP 535



 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 509 PAPPPPPXXFXPP 471
           PAPPPPP    PP
Sbjct: 583 PAPPPPPPMGPPP 595



 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 689 PPPPXKKXGGXXGGGGXXXPPPPPP 763
           PP      G    GG    PPPPPP
Sbjct: 512 PPHGAGYDGRDLTGGPLGPPPPPPP 536


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,033
Number of Sequences: 2352
Number of extensions: 8853
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 105241344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)