Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_J19
(979 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 177 3e-43
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 101 2e-20
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 99 2e-19
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 77 7e-13
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 76 1e-12
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 72 2e-11
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 66 1e-09
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 66 1e-09
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 66 1e-09
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 65 3e-09
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 65 3e-09
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 63 9e-09
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 63 9e-09
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 62 2e-08
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 59 1e-07
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 58 3e-07
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 58 5e-07
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 57 6e-07
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 57 8e-07
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 54 6e-06
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 46 0.001
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 44 0.005
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 44 0.006
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 42 0.018
UniRef50_Q2QMF8 Cluster: Spc97/Spc98 family protein, expressed; ... 41 0.042
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 40 0.073
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 34 4.8
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 34 4.8
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 34 6.4
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 34 6.4
UniRef50_A4G8M3 Cluster: Putative COMPOSITE TWO COMPONENT REGULA... 33 8.4
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 33 8.4
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 177 bits (432), Expect = 3e-43
Identities = 85/99 (85%), Positives = 92/99 (92%)
Frame = +1
Query: 115 VFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 294
V K YV PRRPFEK+RLDQ LKLIGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 295 PKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
P+ LFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFL
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFL 106
Score = 61.7 bits (143), Expect = 3e-08
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHIR 502
ERRLQTQVFK GLAKSIHHAR+LIRQRHIR
Sbjct: 107 ERRLQTQVFKLGLAKSIHHARVLIRQRHIR 136
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 101 bits (243), Expect = 2e-20
Identities = 53/98 (54%), Positives = 67/98 (68%)
Frame = +1
Query: 118 FSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 297
+ K + PRRP+EK R D LKL GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 298 KXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
+ +FEG ALLR + R G+L E Q KLDYVL L +E+FL
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFL 96
Score = 41.9 bits (94), Expect = 0.024
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +2
Query: 419 RLQTQVFKAGLAKSIHHARILIRQRHI 499
RLQT VFK G KSIHH +LIRQ HI
Sbjct: 99 RLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 98.7 bits (235), Expect = 2e-19
Identities = 46/94 (48%), Positives = 64/94 (68%)
Frame = +1
Query: 130 YVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKXLF 309
Y P+ P+E+ R D LKL+G++GL+NK+E+ RV Y L +R A+ +L + KDPK L
Sbjct: 12 YKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLL 71
Query: 310 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
EG ALLRRL +G+L Q KL++VL LK E+ L
Sbjct: 72 EGAALLRRLHNLGILPRDQNKLEFVLALKEENLL 105
Score = 45.6 bits (103), Expect = 0.002
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHIR 502
ERRLQT V++ G AKSIHHAR+LIR + I+
Sbjct: 106 ERRLQTLVYRKGFAKSIHHARVLIRGKMIK 135
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 77.0 bits (181), Expect = 7e-13
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Frame = +1
Query: 109 PSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTL-E 285
P K Y P+RPFEK R+++ +L+ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 286 EKDPKXLFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKI 399
+ +FE + L+ + R G+L +D VL LK+
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLG-PDADIDNVLALKV 102
Score = 33.5 bits (73), Expect = 8.4
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHI 499
ERRLQT V++ GLA+S AR L+ HI
Sbjct: 107 ERRLQTLVYRKGLARSPKQARQLVTHGHI 135
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 76.2 bits (179), Expect = 1e-12
Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Frame = +1
Query: 109 PSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLE- 285
P K Y P+RPFE +R+++ +L+ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 286 --EKDPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
+ + + + L+ L R G+L E +D VL LK+E L
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSE-NADIDDVLALKVEQQL 106
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 72.1 bits (169), Expect = 2e-11
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = +1
Query: 109 PSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 285
P K Y PR P+EK R+D+ K++ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 286 EKDPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
D + +++RL R +L +K LD VL L +E+ L
Sbjct: 64 ASDANAQKQLERMIKRLSRYKILSDK-ATLDDVLSLTVENIL 104
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 66.5 bits (155), Expect = 1e-09
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Frame = +1
Query: 109 PSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 288
P K Y P P++KAR+D+ L+ +YGLRNK+ VW+ L + R AR LL +
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 289 -----KDPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
+D + + ++++L +G+L E KL+ VL LK++D +
Sbjct: 64 AGNLPEDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIM 108
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 66.5 bits (155), Expect = 1e-09
Identities = 38/102 (37%), Positives = 58/102 (56%)
Frame = +1
Query: 109 PSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 288
P + + + P+RPF + L+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 289 KDPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLG 414
+ + + LLR L RIG++ K LD VL L++ D LG
Sbjct: 64 EVRER--KEPVLLRSLARIGLVG-KDASLDDVLNLQVNDLLG 102
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 66.1 bits (154), Expect = 1e-09
Identities = 34/53 (64%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Frame = +1
Query: 217 EVWRVKYTLARIRKAARELLTL-EEKDPKXLFEGNALLRRLVRIGVLDEKQMK 372
EVWRVK+TL +IRKA ELL L EKDP+ LFE N LLR+LV G+L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMK 93
Score = 35.5 bits (78), Expect = 2.1
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHIR 502
E++LQTQVF+ L KSI HA +L+ HIR
Sbjct: 112 EKQLQTQVFELVLDKSIRHACVLLCHCHIR 141
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 64.9 bits (151), Expect = 3e-09
Identities = 33/101 (32%), Positives = 56/101 (55%)
Frame = +1
Query: 109 PSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 288
P + + P P+ + L++ LIG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 289 KDPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
+ L+++L R+G++++ LD +LGL E++L
Sbjct: 64 AERST--REKQLIQKLYRMGIIEKDNATLDDILGLNEENYL 102
Score = 36.7 bits (81), Expect = 0.90
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHI 499
ERRLQT V+K GLA++I+ AR LI HI
Sbjct: 103 ERRLQTIVYKKGLARTIYQARQLIVHGHI 131
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 64.9 bits (151), Expect = 3e-09
Identities = 35/98 (35%), Positives = 54/98 (55%)
Frame = +1
Query: 118 FSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 297
F K Y P P+ K R+++ +L +YGLR KREVW+ + L + R+ AR L++ ++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTE 65
Query: 298 KXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
+ E L L + G+L + LD VL L +ED L
Sbjct: 66 QGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDIL 103
Score = 33.5 bits (73), Expect = 8.4
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHI 499
ERRLQT VF+ GLA++ AR LI HI
Sbjct: 104 ERRLQTLVFRKGLARTPRQARQLIVHGHI 132
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 63.3 bits (147), Expect = 9e-09
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +1
Query: 121 SKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 300
SK PR PFEK RL + +L+G YGL+NK E+W ++ A+ ++ AR LLT +P+
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPE 64
Query: 301 XL-FEGNALLRRLVRIGVL 354
+ G +LLRRL++ G+L
Sbjct: 65 DIPINGRSLLRRLMKYGIL 83
Score = 44.0 bits (99), Expect = 0.006
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHI 499
ERRLQ +VF AGLAKS+HHAR+LI R I
Sbjct: 111 ERRLQFRVFAAGLAKSVHHARLLIGGRCI 139
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 63.3 bits (147), Expect = 9e-09
Identities = 36/103 (34%), Positives = 55/103 (53%)
Frame = +1
Query: 103 SVPSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTL 282
++P +K Y P P++ R+ + L+ YGL+NK E+WR + L R+ AR LL
Sbjct: 2 ALPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-- 59
Query: 283 EEKDPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
G + RL RIG+L E++ +LD VL L++ D L
Sbjct: 60 ---GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVL 98
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 62.1 bits (144), Expect = 2e-08
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Frame = +1
Query: 109 PSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTL-- 282
P SK Y PR P+++AR+ ++L+ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 283 -----EEKDPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
E + + +L +L+R G++ + +D +L LK E+ L
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGII-KADANVDDILSLKTENIL 110
Score = 34.3 bits (75), Expect = 4.8
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHI 499
ERRLQTQV + GLA+++ AR I HI
Sbjct: 111 ERRLQTQVLRLGLARTVIQARQFITHGHI 139
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 59.3 bits (137), Expect = 1e-07
Identities = 27/98 (27%), Positives = 55/98 (56%)
Frame = +1
Query: 118 FSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 297
+SK + P+ P+EK RL +++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 298 KXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
K + +L + ++ L+ ++ + + L
Sbjct: 70 KIPSQSYGILWFCYKYNFMNNMTFCLESIIKIDLRSIL 107
Score = 41.5 bits (93), Expect = 0.032
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 329 VVWFVLEYWMKNR*NSIMCLV*----RLRTSWERRLQTQVFKAGLAKSIHHARILIRQRH 496
++WF +Y N N CL LR+ RRLQT V + L+K+IH ARILI +H
Sbjct: 78 ILWFCYKYNFMN--NMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKH 135
Query: 497 IR*DN 511
I+ N
Sbjct: 136 IQVKN 140
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 58.0 bits (134), Expect = 3e-07
Identities = 34/101 (33%), Positives = 53/101 (52%)
Frame = +1
Query: 109 PSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 288
P SK Y P P+ R+ Q +L +YGL NK+E+W+++ L R+ AR+L++ +
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS--D 61
Query: 289 KDPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
+ E L L R G+L ++ LD VL L +E L
Sbjct: 62 TSAQGEKEAVQLFGILNRYGILLKEDATLDDVLSLNLESIL 102
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 57.6 bits (133), Expect = 5e-07
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +1
Query: 139 PRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKXLFE 312
P++ + K L + L+L+GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM-- 73
Query: 313 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
+L ++G +++ ++LD +L L + L
Sbjct: 74 --PFKEKLYKMGFIEDPNVQLDRILSLDVRAIL 104
Score = 44.0 bits (99), Expect = 0.006
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +2
Query: 398 LRTSWERRLQTQVFKAGLAKSIHHARILIRQRHI 499
+R ERRLQT V++ GLAKSIHHAR LI H+
Sbjct: 100 VRAILERRLQTIVYRMGLAKSIHHARQLIVHGHV 133
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 57.2 bits (132), Expect = 6e-07
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = +1
Query: 220 VWRVKYTLARIRKAARELLTLEEKDPKXLF 309
VWRVK+TLA+IRKAARELLTL+EKDP+ LF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 56.8 bits (131), Expect = 8e-07
Identities = 32/96 (33%), Positives = 52/96 (54%)
Frame = +1
Query: 124 KPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKX 303
K Y P P+ R+ + +L +YGL+NK+E+W+ + + R R+ AR +L ++ +
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDERAD 68
Query: 304 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
+ LL LVR G + KL+ VL L +ED L
Sbjct: 69 --KEKELLDHLVRAGFI-SPNAKLEEVLDLNVEDIL 101
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 54.0 bits (124), Expect = 6e-06
Identities = 33/91 (36%), Positives = 48/91 (52%)
Frame = +1
Query: 139 PRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKXLFEGN 318
P P++K RL +L+ EYGL+NKRE+W + + R AR L + E
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKE 70
Query: 319 ALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
L +L ++GVL E +LD VL L ++D L
Sbjct: 71 RFLTKLKKLGVLSE-NAELDDVLDLTVKDVL 100
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 46.0 bits (104), Expect = 0.001
Identities = 45/155 (29%), Positives = 69/155 (44%)
Frame = -2
Query: 588 LNSTKLKFKWSI*TKQIQAAAIRAPLLSHRICLCRIKILA*WMDFARPALNTCVCRRRSQ 409
L++ + F S+ TK++ I P RI RIK A D ARP+L T VC+RRS+
Sbjct: 61 LSAKSMCFWLSVRTKKLGTFTICLPT---RIWRWRIKTRAWCTDLARPSLKTSVCKRRSK 117
Query: 408 EVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQXXXXXXXXXXXXXXXXXXXXERVFD 229
+++ + I H +N + +T E +
Sbjct: 118 KLVLRLVQQTIRAHA-----ANDS------LTLEDALRVLLIKRKQHASGVAELVKGELH 166
Query: 228 APYFTLVAETVLSDELQRLVKTCLFKRTTRXHVRL 124
AP +LVA+ L+D+LQ V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 44.4 bits (100), Expect = 0.005
Identities = 29/96 (30%), Positives = 48/96 (50%)
Frame = +1
Query: 124 KPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKX 303
+ Y P+ + AR+ LI EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSHD-- 66
Query: 304 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
+ ++ R+V+ G+L E L+ VL + FL
Sbjct: 67 --TSDKIIARMVKFGIL-ENGATLEKVLDITPNAFL 99
Score = 34.3 bits (75), Expect = 4.8
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILI 484
ERRLQT VFK GLA++I AR LI
Sbjct: 100 ERRLQTVVFKKGLARTIKQARQLI 123
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 44.0 bits (99), Expect = 0.006
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = -2
Query: 411 QEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQXXXXXXXXXXXXXXXXXXXXERVF 232
QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQ +
Sbjct: 87 QEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQLER 146
Query: 231 DAPYFTLVAETVLSDELQRLVKTCLFKRTTRXHVRL 124
++ F+LV +TV + +LQ V+T F R+ V L
Sbjct: 147 NSVNFSLVLQTVFTSQLQFGVQTSGFVRSLWSRVSL 182
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 42.3 bits (95), Expect = 0.018
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +1
Query: 118 FSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELL 276
+ K + R + K LD LK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q2QMF8 Cluster: Spc97/Spc98 family protein, expressed;
n=6; Oryza sativa|Rep: Spc97/Spc98 family protein,
expressed - Oryza sativa subsp. japonica (Rice)
Length = 1139
Score = 41.1 bits (92), Expect = 0.042
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Frame = -1
Query: 583 FNKVEV-QVVYMNKTDSGSSN*SATVISPNMPLPDQNSGMMDGLRQASF-EHLRLQTT-- 416
F KV+ V + D GS S + + P M LP QN+G+M+ ASF L+L +
Sbjct: 20 FLKVKAAHVKAKGRNDCGSWRKSGSRVDPPMVLPQQNAGLMEADGSASFIRKLQLSVSDG 79
Query: 415 LPRS---PQSSDQAHNRVSSVFHPVLQ 344
LP + P+ S Q H V SVF VLQ
Sbjct: 80 LPHAAPVPELSTQEHELVKSVFQ-VLQ 105
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 40.3 bits (90), Expect = 0.073
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 187 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKXLFEGNALLRRLVRIGVLDEKQ 366
I +YGLR++ E + + ++RK A L L+E DP L+ RL +GV+ ++
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVIKNRK 91
Query: 367 M 369
+
Sbjct: 92 L 92
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 34.3 bits (75), Expect = 4.8
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 479 KFWHDGWTSPGQL*TPASADDAPKKS 402
+FWH GW+SP Q TPA+A+ + S
Sbjct: 103 QFWHVGWSSPSQSSTPAAAESVGEGS 128
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 34.3 bits (75), Expect = 4.8
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHIR*DN 511
ERRL +++AG SI+ AR+L+ +H+ +N
Sbjct: 132 ERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNN 164
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 33.9 bits (74), Expect = 6.4
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 187 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKXLFEGNALLRRLVRIGVLDEKQ 366
IG +GL+ K E +A+ + +E+ L ++DP + L +L +GV+D KQ
Sbjct: 34 IGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGVIDLKQ 93
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 33.9 bits (74), Expect = 6.4
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHIR 502
ERRL VF+AG A ++ AR L+ RH+R
Sbjct: 93 ERRLDNVVFRAGFAPTVIAARQLVSHRHVR 122
>UniRef50_A4G8M3 Cluster: Putative COMPOSITE TWO COMPONENT
REGULATORY (SENSOR HISTIDINE KINASE AND RESPONSE
REGULATOR HYBRID) TRANSCRIPTION REGULATOR PROTEIN; n=1;
Herminiimonas arsenicoxydans|Rep: Putative COMPOSITE TWO
COMPONENT REGULATORY (SENSOR HISTIDINE KINASE AND
RESPONSE REGULATOR HYBRID) TRANSCRIPTION REGULATOR
PROTEIN - Herminiimonas arsenicoxydans
Length = 1969
Score = 33.5 bits (73), Expect = 8.4
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -1
Query: 478 NSGMMDGLRQASFEHLRLQTTLPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRT 305
N + + L++ S E +RL TL +P++SD+A + + HP PD +E L T
Sbjct: 636 NPFLQEQLKE-SLEQVRLDATLVDNPEASDRARAVIDMLEHPDFVASPDAMEDIALAT 692
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 33.5 bits (73), Expect = 8.4
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHI 499
ERRL VF+AG A S AR ++R +HI
Sbjct: 98 ERRLDNAVFRAGFASSRTQARQIVRHKHI 126
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,458,525
Number of Sequences: 1657284
Number of extensions: 10302076
Number of successful extensions: 27880
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 27217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27871
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 91448297248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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