Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J19
         (979 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   160   2e-40
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   160   3e-40
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    31   0.33 
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    26   9.3  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  160 bits (389), Expect = 2e-40
 Identities = 75/103 (72%), Positives = 86/103 (83%)
 Frame = +1

Query: 103 SVPSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTL 282
           S P   SK Y  PRRPFE ARLD  LKL GEYGLRNK E+WRV  TL++IR+AARELLTL
Sbjct: 3   SAPRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTL 62

Query: 283 EEKDPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
           +EKDPK LFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFL
Sbjct: 63  DEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFL 105



 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = +2

Query: 395 RLRTSWERRLQTQVFKAGLAKSIHHARILIRQRHIR 502
           R+    ERRLQTQVFK GLAKSIHHAR+LI QRHIR
Sbjct: 100 RIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIR 135


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  160 bits (388), Expect = 3e-40
 Identities = 75/103 (72%), Positives = 86/103 (83%)
 Frame = +1

Query: 103 SVPSVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTL 282
           S P   SK Y  PRRPFE ARLD  LKL GEYGLRNK E+WRV  TL++IR+AARELLTL
Sbjct: 3   SAPRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTL 62

Query: 283 EEKDPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
           +EKDPK LFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFL
Sbjct: 63  DEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFL 105



 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = +2

Query: 395 RLRTSWERRLQTQVFKAGLAKSIHHARILIRQRHIR 502
           R+    ERRLQTQVFK GLAKSIHHAR+LI QRHIR
Sbjct: 100 RIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIR 135


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +1

Query: 196 YGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKXLFEGNALLRRLVRIGVLDEKQMKL 375
           Y +  + E  +      + R+ A  L  L+  DP  L   N LL +L  +G+L  K    
Sbjct: 36  YHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMS 95

Query: 376 D 378
           D
Sbjct: 96  D 96


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 543 QIQAAAIRAPLLSHRICLCRIKILA*WMDF 454
           Q +A  +++ LL+H+ C C +KI +   DF
Sbjct: 60  QQEAFRLKSQLLAHQGCQCSVKIRSVLTDF 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,085
Number of Sequences: 5004
Number of extensions: 42473
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)