Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J19
         (979 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   169   3e-42
U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  169 bits (410), Expect = 3e-42
 Identities = 81/100 (81%), Positives = 90/100 (90%)
 Frame = +1

Query: 112 SVFSKPYVXPRRPFEKARLDQALKLIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEK 291
           +V SK    PRRPFEK RLDQ LKLIG +GL+NKREVWRVKYTLA++RKAARELLTLE+K
Sbjct: 6   TVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDK 65

Query: 292 DPKXLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 411
           DPK LFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFL
Sbjct: 66  DPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFL 105



 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 27/30 (90%), Positives = 28/30 (93%)
 Frame = +2

Query: 413 ERRLQTQVFKAGLAKSIHHARILIRQRHIR 502
           ERRLQTQVFK GLAKSIHHARILI+Q HIR
Sbjct: 106 ERRLQTQVFKLGLAKSIHHARILIKQHHIR 135


>U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical
           protein T25D1.1 protein.
          Length = 612

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -1

Query: 481 QNSGMMDGLRQASFEHLRLQTTLPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTX 302
           QNS + +   Q  +E+    +  P SPQ S+Q H+  +++  P++  E    + H  +  
Sbjct: 219 QNSTITEQANQFRYENRAATSERPPSPQFSNQHHDATNAM--PIVYQE---TQLHATKGG 273

Query: 301 SWGP 290
            W P
Sbjct: 274 KWSP 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,152
Number of Sequences: 27780
Number of extensions: 243493
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)