Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J18
         (955 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305     31   1.8  
06_03_1105 - 27634787-27636025                                         29   5.5  
03_05_0850 + 28206166-28206767,28207648-28207891,28208076-282083...    29   5.5  
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    29   7.2  

>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
          Length = 334

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 157 SPRLGSWKTPTQLXSMTPNPFFAQPTVGNGYEPIDNRPYIVNPPKDY 297
           S  + S+  PT + SM P P    P +  GY P         PP +Y
Sbjct: 257 SASVSSYYAPTPVMSMQPTPMPPPPQMSYGYSPYPPMMMPPPPPPEY 303


>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 55  AQTFIFSPGAHSCSSQNAILHAFRPRSAGSGQRSSPRLGSWKTPTQLXSMT 207
           A  ++FSP A SCSS+   L   + R+A    + SP     +TP +  + T
Sbjct: 140 ADPYVFSPKAPSCSSRWRELLGLK-RAAAQSPKPSPSSAPARTPGRAMNST 189


>03_05_0850 +
           28206166-28206767,28207648-28207891,28208076-28208389,
           28209013-28209067
          Length = 404

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = +1

Query: 154 SSPRLGSWKTPTQLXSMTPNPFFAQP------TVGNGYEPIDNRPYI 276
           SSPR+    TP  L S TP+     P      TVG G E +D  P +
Sbjct: 17  SSPRISPHSTPVSLTSATPSGVHRPPGCGRLDTVGEGSELLDPIPEV 63


>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
 Frame = +1

Query: 118 AFRPRSAGSGQRSSPRLGSW-KTPTQLXSMTPNPFFAQPTVGNGYEPIDNRPYIVNPPKD 294
           A RP +  +G    P  G+  + P+     +  P       G+G    +N+ Y  N PK 
Sbjct: 72  AARPGAGNAGGGGEPAKGAQAQQPSPPPPQSQAPNRTHKFDGHGNPNKNNQAYHRNGPKR 131

Query: 295 YNPNGNG---------YEPIDNGAYYVDRPQGPTLLQAYPFP 393
            +P  NG         Y       +Y      P +L  YP+P
Sbjct: 132 RSPAANGTPSYPAAMPYHQHPGQPFYYPVIPSPVILHEYPYP 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,629,138
Number of Sequences: 37544
Number of extensions: 379610
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)