Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J18
         (955 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)          31   1.0  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               31   1.4  
SB_37366| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.82)           31   1.8  
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)               31   1.8  
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_38893| Best HMM Match : UMPH-1 (HMM E-Value=2.3e-21)                29   4.2  

>SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)
          Length = 142

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = -2

Query: 351 VHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSYSRLGKEWIRGH 202
           V ++  V+    AVS+ V V G + D RA++N FV V Y+  G+ ++R H
Sbjct: 24  VSLMVAVIGGVYAVSLMVAVIGCLYDGRAIMN-FV-VKYTPSGQYYLRPH 71


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
 Frame = +1

Query: 70  FSPGAHSCSSQNAILHAFRPRSAGSGQRSSPR--LGSWKTPTQLXSMTP---NPFFAQPT 234
           +SPG  S  +  A   +F P +A      SP     SW +PT    ++P   +P+   P 
Sbjct: 349 WSPGMGSGMTPGAA--SFSPSAASDASGMSPGGFSPSWMSPTPGSPVSPGPTSPYIPSPA 406

Query: 235 VGN-GYEP-----IDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGPTLLQAYP 387
             + GY P     + + P +      Y+P   GY P    + Y   P  P+     P
Sbjct: 407 AASPGYSPSSPAFMPSSPSMSPASPSYSPTSPGYSPSSPSSGY--SPASPSYSPTSP 461


>SB_37366| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.82)
          Length = 705

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
 Frame = +1

Query: 160 PRLGSWKTPTQLXSMTPNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP--IDN 333
           P + S  +P    SM+ NP    PT      P  N   +  PP   +PN   + P   + 
Sbjct: 159 PSVASTSSPQSASSMSQNPTNIDPT---QVVPPSNTTQVFPPPNITHPNNQPFIPQASNF 215

Query: 334 GAYYVDRPQ-GPTLLQAYPFPWCSRWEVXNI 423
            +Y    P+    +    P  W + W+  N+
Sbjct: 216 NSYSTRLPKLNLPVFSGDPLEWMTFWDSFNV 246


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +1

Query: 160 PRLGSWKTPTQLXSMTPNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP--IDN 333
           P + S  +P    SM+ NP    PT      P  N   +V PP   +P+   + P   + 
Sbjct: 116 PSVASTSSPQSASSMSQNPTNIDPT---QVVPPSNTTQVVPPPNITHPSNQPFIPQASNF 172

Query: 334 GAYYVDRPQ-GPTLLQAYPFPWCSRWEVXNI 423
            +Y    P+    +    P  W + W+  N+
Sbjct: 173 NSYSTRLPKVNLPVFSGDPLEWMTFWDSFNV 203


>SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
          Length = 636

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +1

Query: 160 PRLGSWKTPTQLXSMTPNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP--IDN 333
           P + S  +P    SM+ NP    PT      P  N   +V PP   +P+   + P   + 
Sbjct: 500 PSVASTSSPQSASSMSQNPTNIDPT---QVVPPSNTTQVVPPPNITHPSNEPFIPQASNF 556

Query: 334 GAYYVDRPQ-GPTLLQAYPFPWCSRWEVXNI 423
            +Y    P+    +    P  W + W+  N+
Sbjct: 557 NSYSTRLPKLNLPVFSGDPLEWMTFWDSFNV 587


>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +1

Query: 160 PRLGSWKTPTQLXSMTPNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP--IDN 333
           P + S  +P    SM+ NP    PT      P  N   +V PP   +P+   + P   + 
Sbjct: 116 PSVASTSSPQSASSMSQNPTNIDPT---QVVPPSNTTQVVPPPNITHPSNEPFIPQASNF 172

Query: 334 GAYYVDRPQ-GPTLLQAYPFPWCSRWEVXNI 423
            +Y    P+    +    P  W + W+  N+
Sbjct: 173 NSYSTRLPKLNLPVFSGDPLEWMTFWDSFNV 203


>SB_38893| Best HMM Match : UMPH-1 (HMM E-Value=2.3e-21)
          Length = 372

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 298 NPNGNGYEPIDNGAYYVDRPQGPTLLQAYPFPWCS 402
           N NG+G  P + G   V+ P  P +L+  P  W S
Sbjct: 25  NQNGSGISPEEKGPLMVECPGDPLVLERPPPRWSS 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,658,790
Number of Sequences: 59808
Number of extensions: 393521
Number of successful extensions: 1108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2800542235
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)