Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_J18
(955 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF540388-1|AAO16209.1| 370|Homo sapiens c-maf proto-oncogene pr... 32 2.7
AF055377-1|AAC27038.1| 403|Homo sapiens long form transcription... 32 2.7
AF055376-1|AAC27037.1| 373|Homo sapiens short form transcriptio... 32 2.7
BC081542-1|AAH81542.1| 373|Homo sapiens v-maf musculoaponeuroti... 32 3.5
BC041093-1|AAH41093.1| 1099|Homo sapiens R3H domain containing 1... 31 4.7
AC016742-1|AAY14728.1| 784|Homo sapiens unknown protein. 31 4.7
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 31 8.2
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 31 8.2
BC118568-1|AAI18569.1| 252|Homo sapiens PABPC4 protein protein. 31 8.2
BC106908-1|AAI06909.1| 281|Homo sapiens PABPC4 protein protein. 31 8.2
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 31 8.2
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 31 8.2
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 31 8.2
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 31 8.2
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 31 8.2
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 31 8.2
AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protei... 31 8.2
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 31 8.2
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 31 8.2
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 31 8.2
AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant ... 31 8.2
AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant ... 31 8.2
>AF540388-1|AAO16209.1| 370|Homo sapiens c-maf proto-oncogene
protein.
Length = 370
Score = 32.3 bits (70), Expect = 2.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 166 LGSWKTPTQLXSMTPNPFFAQPTVGNGYEP---IDNRPYIVNPPKDYNPNGNGYEPID 330
L S T S+ P+P F+ P+ G+G E +++ ++ P+ NP G+ P D
Sbjct: 55 LSSTPMSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPED 112
>AF055377-1|AAC27038.1| 403|Homo sapiens long form transcription
factor C-MAF protein.
Length = 403
Score = 32.3 bits (70), Expect = 2.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 166 LGSWKTPTQLXSMTPNPFFAQPTVGNGYEP---IDNRPYIVNPPKDYNPNGNGYEPID 330
L S T S+ P+P F+ P+ G+G E +++ ++ P+ NP G+ P D
Sbjct: 55 LSSTPMSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPED 112
>AF055376-1|AAC27037.1| 373|Homo sapiens short form transcription
factor C-MAF protein.
Length = 373
Score = 32.3 bits (70), Expect = 2.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 166 LGSWKTPTQLXSMTPNPFFAQPTVGNGYEP---IDNRPYIVNPPKDYNPNGNGYEPID 330
L S T S+ P+P F+ P+ G+G E +++ ++ P+ NP G+ P D
Sbjct: 55 LSSTPMSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPED 112
>BC081542-1|AAH81542.1| 373|Homo sapiens v-maf musculoaponeurotic
fibrosarcoma oncogene homolog (avian) protein.
Length = 373
Score = 31.9 bits (69), Expect = 3.5
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 166 LGSWKTPTQLXSMTPNPFFAQPTVGNGYEP---IDNRPYIVNPPKDYNPNGNGYEPID 330
L S T S+ P+P F+ P+ G+G E +++ ++ P+ NP G+ P D
Sbjct: 55 LSSTPMSTPCSSVPPSPSFSVPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPED 112
>BC041093-1|AAH41093.1| 1099|Homo sapiens R3H domain containing 1
protein.
Length = 1099
Score = 31.5 bits (68), Expect = 4.7
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = +1
Query: 142 SGQRSSPRLGSWKTPTQLXSMTPNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNP 303
+GQ +SP + P + + P P G + D P + NPP P
Sbjct: 460 NGQVASPSTSFFLLPLEAAGIPPGSILINPQTGQPFINPDGSPVVYNPPMTQQP 513
>AC016742-1|AAY14728.1| 784|Homo sapiens unknown protein.
Length = 784
Score = 31.5 bits (68), Expect = 4.7
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = +1
Query: 142 SGQRSSPRLGSWKTPTQLXSMTPNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNP 303
+GQ +SP + P + + P P G + D P + NPP P
Sbjct: 460 NGQVASPSTSFFLLPLEAAGIPPGSILINPQTGQPFINPDGSPVVYNPPMTQQP 513
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>BC118568-1|AAI18569.1| 252|Homo sapiens PABPC4 protein protein.
Length = 252
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 145 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 197
>BC106908-1|AAI06909.1| 281|Homo sapiens PABPC4 protein protein.
Length = 281
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 145 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 197
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 410
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 174 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 226
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 395 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
>AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant
protein.
Length = 371
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 106 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 158
>AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant
protein.
Length = 358
Score = 30.7 bits (66), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 NAILHAFRPRSAGSGQRSSPRLGS---WKTPTQLXSMTPNPFFAQPTVGNGYE 252
NAIL+ F+P + G + P+ + TP QL M PNP + Q G++
Sbjct: 93 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 145
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,438,818
Number of Sequences: 237096
Number of extensions: 2172450
Number of successful extensions: 4379
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4372
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12603135794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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