Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J18
         (955 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024877-1|AAF60906.2|  138|Caenorhabditis elegans Hypothetical ...    31   0.92 
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    30   2.8  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z77657-9|CAB01149.2|  381|Caenorhabditis elegans Hypothetical pr...    29   6.5  
Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AC024877-1|AAF60906.2|  138|Caenorhabditis elegans Hypothetical
           protein Y95B8A.8 protein.
          Length = 138

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
 Frame = +1

Query: 70  FSPGAHSCSSQNAILHAFRPRSAGSGQRSSPRLGSWKT-PTQLXSMTPNPFFAQP--TVG 240
           + PG +  ++      A  P        + P  G ++T P+Q   + PNP+F +P     
Sbjct: 30  YYPGVNPYAANYGYAAAQLPPPPPPPPVADPYAGQFQTFPSQATKIAPNPYFKKPQNQQQ 89

Query: 241 NGYEPIDNRPYIVNPPKDYNPNGNGYE----PIDNGAYYVD 351
            GY+         N PK++   G G +      DN  YY +
Sbjct: 90  QGYDAAVYNYAQQNTPKNWKHGGGGRQGRQGSGDNKQYYCE 130


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +1

Query: 226 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGP 366
           QP VGN Y+P    P   +PP  Y     GY P   G      P  P
Sbjct: 91  QPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYP 133


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +1

Query: 226 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGP 366
           QP VGN Y+P    P   +PP  Y     GY P   G      P  P
Sbjct: 62  QPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYP 104


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +1

Query: 226 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGP 366
           QP VGN Y+P    P   +PP  Y     GY P   G      P  P
Sbjct: 91  QPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYP 133


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +1

Query: 121 FRPRSAGSGQRSSPRLGSWKTPTQLXSMTPN-PFFAQPT-VGNGYEPIDNRPYIVNPPKD 294
           F PR+A S   S  R    +T  +    TP  PF   P    NG     NRP+   PP +
Sbjct: 311 FPPRNAQSTDLSENRAAPPQTGRKTLMPTPQAPFQNAPAPFTNGPSDDVNRPFQTGPPGN 370

Query: 295 YNPNG 309
              NG
Sbjct: 371 LGRNG 375


>Z77657-9|CAB01149.2|  381|Caenorhabditis elegans Hypothetical
           protein F08H9.5 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = +1

Query: 94  SSQNAILHAFRPRSAGSGQRSSPRLGSWKTPTQLXSMT-PNPFFAQPTVGNGYEPIDNRP 270
           SS NA+   F   S  +  +      S KT T   S +  N  F  P   N Y+P   + 
Sbjct: 240 SSSNAVSFIFHTDSIVT-DKGWLLTWSAKTKTPPISQSGQNGSFTSPNYPNNYDPYTEQI 298

Query: 271 YIVNPPKDYNPN 306
           Y VN P  +  N
Sbjct: 299 YYVNAPTGFQVN 310


>Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 284 LPKTTTLMETATNLSTTVHITWTVPKGRPYFKPTPFPGAR 403
           +P T    E A+ + T++    T PK  P  +P P PG R
Sbjct: 23  IPPTVFRFEKASKIGTSLD---TTPKELPIRRPVPLPGPR 59


>Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 284 LPKTTTLMETATNLSTTVHITWTVPKGRPYFKPTPFPGAR 403
           +P T    E A+ + T++    T PK  P  +P P PG R
Sbjct: 23  IPPTVFRFEKASKIGTSLD---TTPKELPIRRPVPLPGPR 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,450,413
Number of Sequences: 27780
Number of extensions: 304388
Number of successful extensions: 746
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)