Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J18
         (955 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23090.1 68417.m03328 hypothetical protein                          31   1.5  
At1g22900.1 68414.m02860 disease resistance-responsive family pr...    29   3.4  
At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    28   7.9  
At1g72110.1 68414.m08335 expressed protein                             28   7.9  

>At4g23090.1 68417.m03328 hypothetical protein 
          Length = 179

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -2

Query: 414 YFPPRAPGKGVGLK*GRPLGTVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSY 235
           +F P     GV +   RP G +HV  + V   VA++ ++  FG   DV  ++  F  +  
Sbjct: 119 WFQPMLTDVGVAVHSSRPNGILHVSLSGVSPSVAIAYQLFAFG---DVEVLLTLFTIIYL 175

Query: 234 SR 229
           +R
Sbjct: 176 NR 177


>At1g22900.1 68414.m02860 disease resistance-responsive family
           protein similar to pathogenesis-related protein [Pisum
           sativum] gi|4585273|gb|AAD25355
          Length = 187

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 326 STTVHITWTVPKGRPYFKPTPFPGARGGK 412
           ST + +T TV + +PY K TPF G +  K
Sbjct: 15  STVLLLTITVTQSKPYSKTTPFQGNKPDK 43


>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 226 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY-YVDRPQG 363
           +PT+  GY  +    +  NPP DY    N +  I  G + Y D+ QG
Sbjct: 438 RPTLIKGYSYLRKSQFTENPPGDYI---NMFRDISKGGWGYSDKDQG 481


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 482 NSYEILKYIVNTLFRY*-FSKIFXTSHREHQGK 387
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,112
Number of Sequences: 28952
Number of extensions: 275091
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2295205728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)