Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J17
         (980 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0539 + 4653028-4653158,4654329-4654973,4655323-4655448,465...    29   5.7  

>05_01_0539 +
           4653028-4653158,4654329-4654973,4655323-4655448,
           4655537-4655813,4655916-4656143
          Length = 468

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 50  RXFGGSXQSARASPTQNAPLVPXTEKQGNXLPXCINPGVW 169
           R   GS  ++  S +QN PL    + +G   P  +N G W
Sbjct: 120 RILEGSPGTSTPSNSQNGPLARRDDNRGRRQPSPLNSGCW 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,680,721
Number of Sequences: 37544
Number of extensions: 246490
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)