Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J16
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.0  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   9.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 856 PPPGKXXTXXPPPXPXPGXV 915
           PPPG      PPP P PG V
Sbjct: 14  PPPGFEPPSQPPPPPPPGYV 33


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 856 PPPGKXXTXXPPPXPXPGXV 915
           PPPG      PPP P P  V
Sbjct: 766 PPPGVAGAGPPPPPPPPPAV 785



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 856 PPPGKXXTXXPPPXPXPGXVXXXXXP 933
           PPP       PPP P PG       P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 77  FLHCTNGXXASLHXXKIL 130
           F+HC NG   SLH  + L
Sbjct: 383 FMHCNNGEKTSLHLLRTL 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,265
Number of Sequences: 5004
Number of extensions: 12827
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)