Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J14
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    32   0.68 
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    31   0.90 
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    31   0.90 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.3  

>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPPXT 542
           PPP PPP            PPPPP T
Sbjct: 69  PPPPPPPLISILQQAPPPPPPPPPPT 94



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
           PPP PPP            PPPPP
Sbjct: 68  PPPPPPPPLISILQQAPPPPPPPP 91



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
           PPP PPP            PPPPP
Sbjct: 67  PPPPPPPPPLISILQQAPPPPPPP 90


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
           PPP PPP  F         PPPPP
Sbjct: 611 PPPPPPPQSFGMAPISSAAPPPPP 634



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
           PPP PPP            PPPPP
Sbjct: 631 PPPPPPPPMGLPAVGAGAPPPPPP 654



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
           PPP PP  F          PPPPP
Sbjct: 612 PPPPPPQSFGMAPISSAAPPPPPP 635



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
           PPP PPP   F         PPPP
Sbjct: 610 PPPPPPPPQSFGMAPISSAAPPPP 633


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
           PPP PPP  F         PPPPP
Sbjct: 437 PPPPPPPQSFGMAPISSAAPPPPP 460



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
           PPP PPP            PPPPP
Sbjct: 457 PPPPPPPPMGLPAVGAGAPPPPPP 480



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
           PPP PP  F          PPPPP
Sbjct: 438 PPPPPPQSFGMAPISSAAPPPPPP 461



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
           PPP PPP   F         PPPP
Sbjct: 436 PPPPPPPPQSFGMAPISSAAPPPP 459


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 616 PPXPPPXFFFXXXXXXXXPPPPP 548
           PP PPP  F         PPPPP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPP 339


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 616 PPXPPPXFFFXXXXXXXXPPPPP 548
           PP PPP  F         PPPPP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPP 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.151    0.506 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,921,676
Number of Sequences: 27780
Number of extensions: 183505
Number of successful extensions: 391
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)