Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_J14
(935 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 34 0.12
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 33 0.36
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 31 1.1
At3g50140.1 68416.m05481 expressed protein contains Pfam profile... 31 1.5
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 30 1.9
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 30 1.9
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 29 3.4
At1g61080.1 68414.m06877 proline-rich family protein 29 3.4
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin... 29 4.4
At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family... 29 5.9
At5g19090.2 68418.m02270 heavy-metal-associated domain-containin... 28 7.7
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 28 7.7
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 34.3 bits (75), Expect = 0.12
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 643 FFXXXXXXPPPXPPPXFFFXXXXXXXXPPPP 551
FF PPP PPP +F PPPP
Sbjct: 39 FFLPHPPPPPPPPPPPLYFSYFSLPPPPPPP 69
Score = 32.3 bits (70), Expect = 0.48
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -2
Query: 646 FFFXXXXXXPPPXPPPXFFFXXXXXXXXPPPPP 548
FF PPP PPP +F PPPPP
Sbjct: 39 FFLPHPPPPPPPPPPPLYF--SYFSLPPPPPPP 69
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 32.7 bits (71), Expect = 0.36
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP F PPPPP
Sbjct: 506 PPPPPPPLFMSTTSFSPSQPPPPP 529
Score = 31.9 bits (69), Expect = 0.63
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP F PPPPP
Sbjct: 485 PPPPPPPLFTSTTSFSPSQPPPPP 508
Score = 31.9 bits (69), Expect = 0.63
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP F PPPPP
Sbjct: 527 PPPPPPPLFTSTTSFSPSQPPPPP 550
Score = 31.5 bits (68), Expect = 0.83
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP F PPPPP
Sbjct: 620 PPPPPPPSFGSTGNKRQAQPPPPP 643
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPPXT 542
PPP PPP PPPPP T
Sbjct: 641 PPPPPPPPTRIPAAKCAPPPPPPPPT 666
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP F PPPP
Sbjct: 505 PPPPPPPPLFMSTTSFSPSQPPPP 528
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP F PPPP
Sbjct: 484 PPPPPPPPLFTSTTSFSPSQPPPP 507
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP F PPPP
Sbjct: 526 PPPPPPPPLFTSTTSFSPSQPPPP 549
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP F PPPP
Sbjct: 619 PPPPPPPPSFGSTGNKRQAQPPPP 642
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP + PPPPP
Sbjct: 455 PPPPPPPPVYSPPPPPPPPPPPPP 478
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP + PPPPP
Sbjct: 439 PPPPPPPPPVYSPPPPPPPPPPPP 462
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP + PPPPP
Sbjct: 454 PPPPPPPPPVYSPPPPPPPPPPPP 477
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP + PPPPP
Sbjct: 470 PPPPPPPPPVYSPPPPSPPPPPPP 493
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP + PPPPP
Sbjct: 502 PPPPPPPVYSPPPPPVYSSPPPPP 525
>At3g50140.1 68416.m05481 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 508
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP PPPPP
Sbjct: 11 PPPPPPPRLLVLPPLPPPPPPPPP 34
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP PPPPP
Sbjct: 10 PPPPPPPPRLLVLPPLPPPPPPPP 33
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP + + PPPP
Sbjct: 536 PPPSPPPPYIYSSPPPPSPSPPPP 559
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPPXT 542
PPP PPP PPPPP T
Sbjct: 57 PPPPPPPPAVNMSVETGIPPPPPPVT 82
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPPXT 542
PP PP FFF PPPP T
Sbjct: 34 PPVTPPSSFFFFPQSGDLRRPPPPPT 59
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP F P PPP
Sbjct: 419 PPPPPPPPLSFIKTASLPLPSPPP 442
>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
protein contains Pfam heavy metal associated domain
PF00403
Length = 473
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 549 GGGGGXXXXXXXXKKKXGGGXGGG 620
GGGGG +K GGG GGG
Sbjct: 104 GGGGGNNNNNKKGQKNGGGGGGGG 127
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 549 GGGGGXXXXXXXXKKKXGGGXGGG 620
GGGGG +K GGG GGG
Sbjct: 103 GGGGGGNNNNNKKGQKNGGGGGGG 126
>At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family
protein similar to extensin [Catharanthus roseus]
gi|1486263|dbj|BAA13175; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 96
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 619 PPPXPPPXFFFXXXXXXXXPPPPP 548
PPP PPP PPPPP
Sbjct: 51 PPPPPPPPQSHAAAYKRYSPPPPP 74
>At5g19090.2 68418.m02270 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 465
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 549 GGGGGXXXXXXXXKKKXGGGXGGG 620
GGGGG +K GGG GGG
Sbjct: 106 GGGGGGGPANNNKGQKIGGGGGGG 129
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 549 GGGGGXXXXXXXXKKKXGGGXGGG 620
GGGGG +K GGG GGG
Sbjct: 106 GGGGGGGPANNNKGQKIGGGGGGG 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.151 0.506
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,567,365
Number of Sequences: 28952
Number of extensions: 205184
Number of successful extensions: 814
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2236853040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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