Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J12
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    86   6e-18
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    57   4e-09
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    49   1e-06
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    39   0.001
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    38   0.001
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    33   0.042
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    32   0.098
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    30   0.52 
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    29   1.2  

>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 86.2 bits (204), Expect = 6e-18
 Identities = 37/84 (44%), Positives = 60/84 (71%)
 Frame = +3

Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
           L +++ Q V VIT+DGR  +G+LKGFD T N+IL +S ER+ S    +  + LG++++RG
Sbjct: 3   LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62

Query: 297 DNVAIVGQIDESIDSRLDLGNIKG 368
           +NVA+VG ++E +DS ++   I+G
Sbjct: 63  ENVAMVGLVNEELDSEIEWTKIRG 86


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 25/73 (34%), Positives = 46/73 (63%)
 Frame = +3

Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHI 287
           +  L +YV++ V V+  DG+  IG L+ FDQ  N++L  + ER++        +  G++I
Sbjct: 13  SGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDM-YGDIDRGVYI 71

Query: 288 IRGDNVAIVGQID 326
           +RG+NV ++G++D
Sbjct: 72  VRGENVVLLGELD 84


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = +3

Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGV---AQVVLGLHI 287
           L  Y +Q +    + GR   G LKGFDQ +N++LD+  E++ +   G    A   LGL +
Sbjct: 28  LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87

Query: 288 IRGDNVAIVGQIDES 332
           +RG  + ++  +D S
Sbjct: 88  VRGTTLVLIAPMDGS 102


>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 22/74 (29%), Positives = 41/74 (55%)
 Frame = +3

Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHI 287
           A  L+ Y+++ V V  +  R   G L+G+D  +NI+L++S E          +V +G   
Sbjct: 6   APDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG----EKVKIGSVA 61

Query: 288 IRGDNVAIVGQIDE 329
           IRG++V ++  +D+
Sbjct: 62  IRGNSVIMIETLDK 75


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
 Frame = +3

Query: 129 VNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE-------RVFSSTSGVAQVVLGLHI 287
           +N +++V T DGR F+G L  FD  +N++L +  E        V S++    + +LGL I
Sbjct: 10  LNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVI 69

Query: 288 IRGD 299
           +RG+
Sbjct: 70  LRGE 73


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQ 266
           ++  +   + VI    R F GTL GFD  +NI+L +  E  + + +GV +
Sbjct: 11  IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTE--YDTVTGVTE 58


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +3

Query: 192 FDQTINIILDESHERVFSSTSGVAQVVLGLHIIR--GDNVAIVGQIDESIDSRLDLGNI 362
           FD T+    D   +R F+S S +  V+LGLH ++  G N  I+G I   + S++ L +I
Sbjct: 823 FDSTLASSSDNDEQRDFASNSSI--VLLGLHYLKYFGSNKYILGSILLVMMSQVSLASI 879


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 15/49 (30%), Positives = 32/49 (65%)
 Frame = +3

Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 323
           G ++GFD+ +NI+LD++  +V +  +   +  LG  +++GDN+ ++  I
Sbjct: 40  GQIRGFDEFMNIVLDDA-VQVDAKNN---KRELGRILLKGDNITLIQAI 84


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -2

Query: 352 RSNLLSIDSSICPT----IATLSPLIM*SPSTT*ATPLVEENTLS*DSSKIIFIVWSKPL 185
           +SN+L +D +I PT    I TL P  + SP       LV   TL+ D SKI  +    P 
Sbjct: 322 KSNILDLDQNISPTFLPDIDTLLPYRLPSP----LQKLVFSATLTRDPSKIASLKLHNPR 377

Query: 184 RVPIKLRPSEV 152
            V ++ +  EV
Sbjct: 378 LVLVQNKDMEV 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,261
Number of Sequences: 5004
Number of extensions: 48529
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)