Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_J12
(908 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 74 4e-25
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 42 7e-04
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 39 0.005
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 36 0.034
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 36 0.044
07_01_0479 + 3606663-3607448 35 0.10
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 31 1.3
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 29 3.9
04_04_0022 + 22199603-22199782,22201434-22201502,22201610-222017... 29 3.9
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 29 6.7
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 73.7 bits (173), Expect(2) = 4e-25
Identities = 32/45 (71%), Positives = 40/45 (88%)
Frame = +3
Query: 114 GLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSS 248
GLE+ V+Q +SVIT+DGRN +GTL+GFDQ NIILDESHERV+S+
Sbjct: 7 GLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYST 51
Score = 59.7 bits (138), Expect(2) = 4e-25
Identities = 24/44 (54%), Positives = 36/44 (81%)
Frame = +3
Query: 234 RVFSSTSGVAQVVLGLHIIRGDNVAIVGQIDESIDSRLDLGNIK 365
+V GV Q+VLGL+IIRGDN+++VG++DE +D+RLDL N++
Sbjct: 89 KVSCQHEGVQQLVLGLYIIRGDNISVVGEVDEELDARLDLSNLR 132
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 41.9 bits (94), Expect = 7e-04
Identities = 18/70 (25%), Positives = 44/70 (62%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ Y+++ + + + R +GTL+GFDQ +N+++D + E +G + +G+ ++RG
Sbjct: 10 LKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVVRG 64
Query: 297 DNVAIVGQID 326
++V ++ ++
Sbjct: 65 NSVVMIEALE 74
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 39.1 bits (87), Expect = 0.005
Identities = 19/71 (26%), Positives = 39/71 (54%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
++ + + VI + +GTL GFD +N++L++ E +++ G L ++ G
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTA-EGRRITKLDQILLNG 142
Query: 297 DNVAIVGQIDE 329
+N+AIV +D+
Sbjct: 143 NNIAIVRNLDQ 153
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 36.3 bits (80), Expect = 0.034
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 165 RNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQID 326
R IGTL+GFDQ +N+++D + E +G + +G+ +IRG++V ++ ++
Sbjct: 40 RVVIGTLRGFDQFMNLVVDNTVE-----VNGNEKNDIGMVVIRGNSVVMIEALE 88
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +3
Query: 162 GRNFIGTLKGFDQTINIILDES--HERVFS---STSGVAQVVLGLHIIRGDNVAIVGQID 326
G++ GTLKG+DQ +N++LDE+ ER SG + LGL + RG V +V D
Sbjct: 33 GQSVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGKTR-QLGLIVCRGTAVMLVSPTD 91
>07_01_0479 + 3606663-3607448
Length = 261
Score = 34.7 bits (76), Expect = 0.10
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +3
Query: 111 SGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE------RVFSSTSGVAQV- 269
S + +VN + V DGR +G FD+ +N++L + E S T+G +
Sbjct: 7 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTTGEREER 66
Query: 270 -VLGLHIIRGDNV 305
LGL ++RG+ V
Sbjct: 67 RTLGLLLLRGEEV 79
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +3
Query: 186 KGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIV 314
KGFD+ +N++LDE+ E + + LG +++GDN+ ++
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDT---RKSLGRILLKGDNITLM 136
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +3
Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIV 314
G + GFD+ +N++LD++ E + + LG +++GDN+ ++
Sbjct: 32 GRIIGFDEYMNLVLDDAEE---INVKKDTRKSLGRILLKGDNITLM 74
>04_04_0022 +
22199603-22199782,22201434-22201502,22201610-22201708,
22201776-22201859,22202400-22202477
Length = 169
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +3
Query: 267 VVLGLHIIRGDNVAIVGQI 323
V LGL++IRG+NV ++G++
Sbjct: 98 VPLGLYVIRGENVVLIGEL 116
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 28.7 bits (61), Expect = 6.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 393 MYHWSKWFCP*CFRGLIC 340
++HWS W CP C +C
Sbjct: 179 LFHWSSWVCPSCRSCEVC 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,483
Number of Sequences: 37544
Number of extensions: 305236
Number of successful extensions: 564
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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