Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_J12
(908 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 145 2e-34
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 145 2e-34
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 145 2e-34
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 145 2e-34
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 116 2e-25
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 49 3e-05
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 49 3e-05
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 49 3e-05
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 41 0.007
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 41 0.007
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 41 0.007
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 41 0.007
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 41 0.007
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 41 0.007
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 41 0.007
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 41 0.007
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 41 0.007
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 41 0.007
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 41 0.007
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 41 0.007
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 41 0.007
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 41 0.007
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 41 0.007
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 41 0.007
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 41 0.007
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 41 0.007
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 41 0.007
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 41 0.007
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 41 0.007
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 40 0.012
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 40 0.012
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 40 0.012
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 40 0.012
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 40 0.012
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 39 0.029
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 39 0.029
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 39 0.029
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 39 0.029
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 39 0.029
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 39 0.029
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 39 0.029
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 39 0.029
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 39 0.029
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 38 0.038
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 38 0.067
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 36 0.27
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 35 0.35
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 35 0.35
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 35 0.35
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 35 0.35
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 35 0.35
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 34 0.62
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 34 0.62
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 34 0.62
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 34 0.62
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 34 0.62
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 34 0.62
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 34 0.62
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 31 5.8
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 31 5.8
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 31 5.8
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 31 7.6
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 31 7.6
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 145 bits (351), Expect = 2e-34
Identities = 66/87 (75%), Positives = 78/87 (89%)
Frame = +3
Query: 105 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 284
M S LENY+N+TV+VITSDGR +GTLKGFDQTIN+ILDESHERVFSS+ GV QVVLGL+
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 285 IIRGDNVAIVGQIDESIDSRLDLGNIK 365
I+RGDNVA++G+IDE DS LDLGNI+
Sbjct: 61 IVRGDNVAVIGEIDEETDSALDLGNIR 87
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 145 bits (351), Expect = 2e-34
Identities = 66/87 (75%), Positives = 78/87 (89%)
Frame = +3
Query: 105 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 284
M S LENY+N+TV+VITSDGR +GTLKGFDQTIN+ILDESHERVFSS+ GV QVVLGL+
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 285 IIRGDNVAIVGQIDESIDSRLDLGNIK 365
I+RGDNVA++G+IDE DS LDLGNI+
Sbjct: 61 IVRGDNVAVIGEIDEETDSALDLGNIR 87
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 145 bits (351), Expect = 2e-34
Identities = 66/87 (75%), Positives = 78/87 (89%)
Frame = +3
Query: 105 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 284
M S LENY+N+TV+VITSDGR +GTLKGFDQTIN+ILDESHERVFSS+ GV QVVLGL+
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 285 IIRGDNVAIVGQIDESIDSRLDLGNIK 365
I+RGDNVA++G+IDE DS LDLGNI+
Sbjct: 61 IVRGDNVAVIGEIDEETDSALDLGNIR 87
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 145 bits (351), Expect = 2e-34
Identities = 66/87 (75%), Positives = 78/87 (89%)
Frame = +3
Query: 105 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 284
M S LENY+N+TV+VITSDGR +GTLKGFDQTIN+ILDESHERVFSS+ GV QVVLGL+
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 285 IIRGDNVAIVGQIDESIDSRLDLGNIK 365
I+RGDNVA++G+IDE DS LDLGNI+
Sbjct: 61 IVRGDNVAVIGEIDEETDSALDLGNIR 87
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 116 bits (278), Expect = 2e-25
Identities = 53/67 (79%), Positives = 61/67 (91%)
Frame = +3
Query: 105 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 284
M S LENY+N+TV+VITSDGR +GTLKGFDQTIN+ILDESHERVFSS+ GV QVVLGL+
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 285 IIRGDNV 305
I+RGDNV
Sbjct: 61 IVRGDNV 67
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 48.8 bits (111), Expect = 3e-05
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +3
Query: 147 VITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQID 326
V+ DGR IG L+ DQ N++L ++ ER+ + G+ ++RG+NV ++G+ID
Sbjct: 20 VLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIFVVRGENVVLLGEID 78
Query: 327 ESIDSRLDLGNI 362
+S L +
Sbjct: 79 LEKESDTPLQQV 90
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 48.8 bits (111), Expect = 3e-05
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +3
Query: 147 VITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQID 326
V+ DGR IG L+ DQ N++L ++ ER+ + G+ ++RG+NV ++G+ID
Sbjct: 20 VLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIFVVRGENVVLLGEID 78
Query: 327 ESIDSRLDLGNI 362
+S L +
Sbjct: 79 LEKESDTPLQQV 90
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 48.8 bits (111), Expect = 3e-05
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +3
Query: 147 VITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQID 326
V+ DGR IG L+ DQ N++L ++ ER+ + G+ ++RG+NV ++G+ID
Sbjct: 20 VLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIFVVRGENVVLLGEID 78
Query: 327 ESIDSRLDLGNI 362
+S L +
Sbjct: 79 LEKESDTPLQQV 90
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.007
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.007
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.007
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.007
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.007
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.007
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.007
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.007
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 40.7 bits (91), Expect = 0.007
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----V 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E ++ S A+
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 40.7 bits (91), Expect = 0.007
Identities = 21/70 (30%), Positives = 46/70 (65%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ ++++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ ++ ++
Sbjct: 65 NSIIMLEALE 74
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 39.9 bits (89), Expect = 0.012
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Frame = +3
Query: 126 YVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----VVLGLHI 287
+++ + I DGR FIGT K FD+ +N+IL + E ++ S A+ VLGL +
Sbjct: 5 HIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVL 64
Query: 288 IRGDNV 305
+RG+N+
Sbjct: 65 LRGENL 70
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 39.9 bits (89), Expect = 0.012
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Frame = +3
Query: 126 YVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQ----VVLGLHI 287
+++ + I DGR FIGT K FD+ +N+IL + E ++ S A+ VLGL +
Sbjct: 5 HIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVL 64
Query: 288 IRGDNV 305
+RG+N+
Sbjct: 65 LRGENL 70
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 39.9 bits (89), Expect = 0.012
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERV------FSSTSGVAQVVLG 278
L Y+++T+ V GR G LKGFD +N++LD + E + + T Q LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ--LG 72
Query: 279 LHIIRGDNVAIV 314
L + RG +V ++
Sbjct: 73 LVVCRGTSVVLI 84
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 39.9 bits (89), Expect = 0.012
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERV------FSSTSGVAQVVLG 278
L Y+++T+ V GR G LKGFD +N++LD + E + + T Q LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ--LG 72
Query: 279 LHIIRGDNVAIV 314
L + RG +V ++
Sbjct: 73 LVVCRGTSVVLI 84
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 39.9 bits (89), Expect = 0.012
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERV------FSSTSGVAQVVLG 278
L Y+++T+ V GR G LKGFD +N++LD + E + + T Q LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ--LG 72
Query: 279 LHIIRGDNVAIV 314
L + RG +V ++
Sbjct: 73 LVVCRGTSVVLI 84
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 38.7 bits (86), Expect = 0.029
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.029
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 38.7 bits (86), Expect = 0.029
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.029
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.029
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.029
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.029
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.029
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 38.7 bits (86), Expect = 0.029
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 38.3 bits (85), Expect = 0.038
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------ 269
+S + +++ + I DGR FIGT K FD+ +N+IL + E Q
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPEREEKR 65
Query: 270 VLGLHIIRGDNV 305
VLGL ++RG+N+
Sbjct: 66 VLGLVLLRGENL 77
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 37.5 bits (83), Expect = 0.067
Identities = 20/66 (30%), Positives = 43/66 (65%)
Frame = +3
Query: 129 VNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVA 308
+++ +S+ + GR+ G L+GFD +N+++DE E +TSG Q +G+ +IRG+++
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE---MATSG-QQNNIGMVVIRGNSII 56
Query: 309 IVGQID 326
++ ++
Sbjct: 57 MLEALE 62
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 35.5 bits (78), Expect = 0.27
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = +3
Query: 159 DGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQV------VLGLHIIRGDNV 305
DGR FIGT K FD+ +N+IL + E Q VLGL ++RG+N+
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 55
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 35.1 bits (77), Expect = 0.35
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQVVLGLHII 290
LE +N+T+ + +DGR +G D+ N+IL + E + S S VLGL ++
Sbjct: 45 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMV 104
Query: 291 RGDNVAIVGQIDESI 335
G ++ + ES+
Sbjct: 105 PGHHIVSIEVQRESL 119
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 35.1 bits (77), Expect = 0.35
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQVVLGLHII 290
LE +N+T+ + +DGR +G D+ N+IL + E + S S VLGL ++
Sbjct: 45 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMV 104
Query: 291 RGDNVAIVGQIDESI 335
G ++ + ES+
Sbjct: 105 PGHHIVSIEVQRESL 119
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 35.1 bits (77), Expect = 0.35
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQVVLGLHII 290
LE +N+T+ + +DGR +G D+ N+IL + E + S S VLGL ++
Sbjct: 93 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMV 152
Query: 291 RGDNVAIVGQIDESI 335
G ++ + ES+
Sbjct: 153 PGHHIVSIEVQRESL 167
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 35.1 bits (77), Expect = 0.35
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQVVLGLHII 290
LE +N+T+ + +DGR +G D+ N+IL + E + S S VLGL ++
Sbjct: 45 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMV 104
Query: 291 RGDNVAIVGQIDESI 335
G ++ + ES+
Sbjct: 105 PGHHIVSIEVQRESL 119
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 35.1 bits (77), Expect = 0.35
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE--RVFSSTSGVAQVVLGLHII 290
LE +N+T+ + +DGR +G D+ N+IL + E + S S VLGL ++
Sbjct: 45 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMV 104
Query: 291 RGDNVAIVGQIDESI 335
G ++ + ES+
Sbjct: 105 PGHHIVSIEVQRESL 119
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 34.3 bits (75), Expect = 0.62
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 323
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 34.3 bits (75), Expect = 0.62
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 323
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 34.3 bits (75), Expect = 0.62
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 323
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 34.3 bits (75), Expect = 0.62
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 323
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 34 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 79
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 34.3 bits (75), Expect = 0.62
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 323
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 34.3 bits (75), Expect = 0.62
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 323
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 34.3 bits (75), Expect = 0.62
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQI 323
G + GFD+ +N++LD++ E + S T Q LG +++GDN+ ++ +
Sbjct: 45 GCIIGFDEYMNLVLDDA-EEIHSKTKSRKQ--LGRIMLKGDNITLLQSV 90
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 31.1 bits (67), Expect = 5.8
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSST-SGVAQVVLGLHIIR 293
++ + + ++ + +GTL GFD +N++L++ E F T G L ++
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE--FEITPEGRRITKLDQILLN 75
Query: 294 GDNVAIV 314
G+N+ ++
Sbjct: 76 GNNITML 82
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 31.1 bits (67), Expect = 5.8
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSST-SGVAQVVLGLHIIR 293
++ + + ++ + +GTL GFD +N++L++ E F T G L ++
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE--FEITPEGRRITKLDQILLN 75
Query: 294 GDNVAIV 314
G+N+ ++
Sbjct: 76 GNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 31.1 bits (67), Expect = 5.8
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSST-SGVAQVVLGLHIIR 293
++ + + ++ + +GTL GFD +N++L++ E F T G L ++
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE--FEITPEGRRITKLDQILLN 75
Query: 294 GDNVAIV 314
G+N+ ++
Sbjct: 76 GNNITML 82
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 30.7 bits (66), Expect = 7.6
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 150 ITSDGRNFIGTLKGFDQTINII 215
I DGR FIGT K FD+ +N+I
Sbjct: 60 ILQDGRVFIGTFKAFDKHMNMI 81
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 30.7 bits (66), Expect = 7.6
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 150 ITSDGRNFIGTLKGFDQTINII 215
I DGR FIGT K FD+ +N+I
Sbjct: 60 ILQDGRVFIGTFKAFDKHMNMI 81
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,983,666
Number of Sequences: 237096
Number of extensions: 1730207
Number of successful extensions: 2320
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 2268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2317
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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