BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_J12 (908 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 111 5e-25 Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 53 2e-07 Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 46 3e-05 Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 40 0.002 AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 40 0.002 AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 40 0.002 Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 33 0.37 Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 32 0.49 Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 29 6.1 Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 29 6.1 >AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like protein protein 8 protein. Length = 98 Score = 111 bits (268), Expect = 5e-25 Identities = 48/87 (55%), Positives = 68/87 (78%) Frame = +3 Query: 105 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 284 M S L+ Y+N+ V+V+T DGR +G LKGFDQ IN++++++HER +S T GV LGL+ Sbjct: 1 MTSTLDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLY 60 Query: 285 IIRGDNVAIVGQIDESIDSRLDLGNIK 365 IIRG+NVAI+G+IDE +D R+DL N+K Sbjct: 61 IIRGENVAIIGEIDEELDKRVDLENVK 87 >Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical protein F40F8.9 protein. Length = 125 Score = 53.2 bits (122), Expect = 2e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = +3 Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHI 287 A L +++ + V+ DGR IG L+ DQ N+IL++ ER F + G + Sbjct: 11 AISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVE-KYFCETGQGFML 69 Query: 288 IRGDNVAIVGQIDESIDSRL 347 IRG+NV + G+ID++I++ L Sbjct: 70 IRGENVELAGEIDDTIETGL 89 >Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical protein W08E3.1 protein. Length = 160 Score = 46.4 bits (105), Expect = 3e-05 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Frame = +3 Query: 126 YVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE------RVFSSTSGVAQVVLGLHI 287 ++N + +I DGR FIG K FD+ +NI+L E E + T G + +LGL + Sbjct: 12 HLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVL 71 Query: 288 IRGDNV 305 +RG+++ Sbjct: 72 VRGEHI 77 >Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical protein ZK593.7 protein. Length = 104 Score = 40.3 bits (90), Expect = 0.002 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%) Frame = +3 Query: 102 EMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFS----STSGVAQV 269 E L ++++ + V GR G L+GFDQ +N++LD+ E + S G Sbjct: 11 ESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETR 70 Query: 270 VLGLHIIRGDNVAIVGQID 326 LGL + RG + +V D Sbjct: 71 QLGLIVARGTAITVVSPAD 89 >AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G protein. Length = 77 Score = 39.9 bits (89), Expect = 0.002 Identities = 21/66 (31%), Positives = 40/66 (60%) Frame = +3 Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296 L+ Y+++ + + + R G L+GFD +N+++DE+ E + G V LG+ +IRG Sbjct: 9 LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQKDGG--SVNLGMTVIRG 64 Query: 297 DNVAIV 314 ++V I+ Sbjct: 65 NSVVIM 70 >AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear ribonucleoproteinprotein 7 protein. Length = 77 Score = 39.9 bits (89), Expect = 0.002 Identities = 21/66 (31%), Positives = 40/66 (60%) Frame = +3 Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296 L+ Y+++ + + + R G L+GFD +N+++DE+ E + G V LG+ +IRG Sbjct: 9 LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQKDGG--SVNLGMTVIRG 64 Query: 297 DNVAIV 314 ++V I+ Sbjct: 65 NSVVIM 70 >Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical protein F28F8.3 protein. Length = 91 Score = 32.7 bits (71), Expect = 0.37 Identities = 14/66 (21%), Positives = 35/66 (53%) Frame = +3 Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296 ++ + + VI + + +GTL GFD +N++L++ E ++ G L ++ G Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVE-YENTADGKRMTKLDTILLNG 76 Query: 297 DNVAIV 314 +++ ++ Sbjct: 77 NHITML 82 >Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical protein Y49E10.15 protein. Length = 90 Score = 32.3 bits (70), Expect = 0.49 Identities = 15/46 (32%), Positives = 29/46 (63%) Frame = +3 Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIV 314 G + GFD+ +N++ DE+ E V T G ++ G +++GDN+ ++ Sbjct: 41 GYIIGFDEFMNVVFDEA-EEVNMKTKGRNKI--GRILLKGDNITLI 83 >Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical protein F10F2.1 protein. Length = 2507 Score = 28.7 bits (61), Expect = 6.1 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%) Frame = -2 Query: 382 VQVVLPLM----FPRSNLLSIDSSICPTIATLSPLIM*SPSTT 266 +Q++LPL P SN SID +C T+ +L L++ S ++ Sbjct: 571 IQILLPLFAQIDLPSSNDNSIDGEVCQTLLSLIALLLSSSQSS 613 >Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein F10F2.1 protein. Length = 2507 Score = 28.7 bits (61), Expect = 6.1 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%) Frame = -2 Query: 382 VQVVLPLM----FPRSNLLSIDSSICPTIATLSPLIM*SPSTT 266 +Q++LPL P SN SID +C T+ +L L++ S ++ Sbjct: 571 IQILLPLFAQIDLPSSNDNSIDGEVCQTLLSLIALLLSSSQSS 613 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,539,204 Number of Sequences: 27780 Number of extensions: 270964 Number of successful extensions: 519 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 502 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 514 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2318293978 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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