Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J12
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...   111   5e-25
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    46   3e-05
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    40   0.002
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    40   0.002
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    40   0.002
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    33   0.37 
Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical p...    32   0.49 
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    29   6.1  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    29   6.1  

>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score =  111 bits (268), Expect = 5e-25
 Identities = 48/87 (55%), Positives = 68/87 (78%)
 Frame = +3

Query: 105 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 284
           M S L+ Y+N+ V+V+T DGR  +G LKGFDQ IN++++++HER +S T GV    LGL+
Sbjct: 1   MTSTLDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLY 60

Query: 285 IIRGDNVAIVGQIDESIDSRLDLGNIK 365
           IIRG+NVAI+G+IDE +D R+DL N+K
Sbjct: 61  IIRGENVAIIGEIDEELDKRVDLENVK 87


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 28/80 (35%), Positives = 46/80 (57%)
 Frame = +3

Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHI 287
           A  L   +++ + V+  DGR  IG L+  DQ  N+IL++  ER F       +   G  +
Sbjct: 11  AISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVE-KYFCETGQGFML 69

Query: 288 IRGDNVAIVGQIDESIDSRL 347
           IRG+NV + G+ID++I++ L
Sbjct: 70  IRGENVELAGEIDDTIETGL 89


>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
 Frame = +3

Query: 126 YVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE------RVFSSTSGVAQVVLGLHI 287
           ++N  + +I  DGR FIG  K FD+ +NI+L E  E      +    T G  + +LGL +
Sbjct: 12  HLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVL 71

Query: 288 IRGDNV 305
           +RG+++
Sbjct: 72  VRGEHI 77


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +3

Query: 102 EMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFS----STSGVAQV 269
           E    L  ++++ + V    GR   G L+GFDQ +N++LD+  E +      S  G    
Sbjct: 11  ESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETR 70

Query: 270 VLGLHIIRGDNVAIVGQID 326
            LGL + RG  + +V   D
Sbjct: 71  QLGLIVARGTAITVVSPAD 89


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/66 (31%), Positives = 40/66 (60%)
 Frame = +3

Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
           L+ Y+++ + +  +  R   G L+GFD  +N+++DE+ E  +    G   V LG+ +IRG
Sbjct: 9   LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQKDGG--SVNLGMTVIRG 64

Query: 297 DNVAIV 314
           ++V I+
Sbjct: 65  NSVVIM 70


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/66 (31%), Positives = 40/66 (60%)
 Frame = +3

Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
           L+ Y+++ + +  +  R   G L+GFD  +N+++DE+ E  +    G   V LG+ +IRG
Sbjct: 9   LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQKDGG--SVNLGMTVIRG 64

Query: 297 DNVAIV 314
           ++V I+
Sbjct: 65  NSVVIM 70


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 14/66 (21%), Positives = 35/66 (53%)
 Frame = +3

Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
           ++  +   + VI  + +  +GTL GFD  +N++L++  E   ++  G     L   ++ G
Sbjct: 18  IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVE-YENTADGKRMTKLDTILLNG 76

Query: 297 DNVAIV 314
           +++ ++
Sbjct: 77  NHITML 82


>Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical
           protein Y49E10.15 protein.
          Length = 90

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = +3

Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIV 314
           G + GFD+ +N++ DE+ E V   T G  ++  G  +++GDN+ ++
Sbjct: 41  GYIIGFDEFMNVVFDEA-EEVNMKTKGRNKI--GRILLKGDNITLI 83


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
           protein F10F2.1 protein.
          Length = 2507

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -2

Query: 382 VQVVLPLM----FPRSNLLSIDSSICPTIATLSPLIM*SPSTT 266
           +Q++LPL      P SN  SID  +C T+ +L  L++ S  ++
Sbjct: 571 IQILLPLFAQIDLPSSNDNSIDGEVCQTLLSLIALLLSSSQSS 613


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
           protein F10F2.1 protein.
          Length = 2507

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -2

Query: 382 VQVVLPLM----FPRSNLLSIDSSICPTIATLSPLIM*SPSTT 266
           +Q++LPL      P SN  SID  +C T+ +L  L++ S  ++
Sbjct: 571 IQILLPLFAQIDLPSSNDNSIDGEVCQTLLSLIALLLSSSQSS 613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,539,204
Number of Sequences: 27780
Number of extensions: 270964
Number of successful extensions: 519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)