Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_J12
(908 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 119 2e-27
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 63 3e-10
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 63 3e-10
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 63 3e-10
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 45 6e-05
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 45 6e-05
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 42 7e-04
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 40 0.002
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 33 0.35
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 33 0.35
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 32 0.46
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 32 0.46
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 32 0.46
At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related... 30 2.4
At3g07330.1 68416.m00874 glycosyl transferase family 2 protein s... 30 2.4
At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /... 29 4.3
At5g49750.1 68418.m06162 leucine-rich repeat family protein cont... 29 4.3
At1g60300.1 68414.m06790 apical meristem formation protein-relat... 29 4.3
At5g27920.1 68418.m03354 F-box family protein contains similarit... 28 7.4
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 119 bits (287), Expect = 2e-27
Identities = 52/85 (61%), Positives = 68/85 (80%)
Frame = +3
Query: 111 SGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHII 290
+GLE V+Q +SVIT+DGRN +G LKGFDQ NIILDESHERVFS+ GV Q VLGL+II
Sbjct: 5 TGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYII 64
Query: 291 RGDNVAIVGQIDESIDSRLDLGNIK 365
RGDN+ ++G++DE +D+ LD ++
Sbjct: 65 RGDNIGVIGELDEELDASLDFSKLR 89
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/74 (36%), Positives = 49/74 (66%)
Frame = +3
Query: 105 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 284
+++ L +Y+++ + V+ DGR +GTL+ FDQ N +L+ + ERV + LGL+
Sbjct: 11 LSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ-YCDIPLGLY 69
Query: 285 IIRGDNVAIVGQID 326
+IRG+NV ++G++D
Sbjct: 70 VIRGENVVLIGELD 83
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/74 (36%), Positives = 49/74 (66%)
Frame = +3
Query: 105 MASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLH 284
+++ L +Y+++ + V+ DGR +GTL+ FDQ N +L+ + ERV + LGL+
Sbjct: 11 LSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ-YCDIPLGLY 69
Query: 285 IIRGDNVAIVGQID 326
+IRG+NV ++G++D
Sbjct: 70 VIRGENVVLIGELD 83
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 62.9 bits (146), Expect = 3e-10
Identities = 28/73 (38%), Positives = 48/73 (65%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHI 287
++ L Y+++ + V+ DGR +G L+ FDQ N +L+E++ERV + LGL+I
Sbjct: 12 STSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDL-YCDIPLGLYI 70
Query: 288 IRGDNVAIVGQID 326
IRG+NV ++G++D
Sbjct: 71 IRGENVVLIGELD 83
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = +3
Query: 102 EMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDES------HERVFSSTSGVA 263
E L +V++ V V + GR GTLKG+DQ +N++LDE+ H+ +T
Sbjct: 6 ETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTR 65
Query: 264 QVVLGLHIIRGDNVAIVGQID 326
+ LGL + RG V +V D
Sbjct: 66 R--LGLIVCRGTAVMLVSPTD 84
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = +3
Query: 102 EMASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDES------HERVFSSTSGVA 263
E L +V++ V V + GR GTLKG+DQ +N++LDE+ H+ +T
Sbjct: 6 ETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTR 65
Query: 264 QVVLGLHIIRGDNVAIVGQID 326
+ LGL + RG V +V D
Sbjct: 66 R--LGLIVCRGTAVMLVSPTD 84
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/70 (27%), Positives = 43/70 (61%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ Y+++ + + + R +GTL+GFDQ +N+++D + E +G + +G+ +IRG
Sbjct: 10 LKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE-----VNGDDKTDIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ V ++
Sbjct: 65 NSIVTVEALE 74
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/70 (27%), Positives = 42/70 (60%)
Frame = +3
Query: 117 LENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRG 296
L+ Y+++ + + + R GTL+GFDQ +N+++D + E +G + +G+ +IRG
Sbjct: 10 LKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 64
Query: 297 DNVAIVGQID 326
+++ V ++
Sbjct: 65 NSIVTVEALE 74
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE 233
+S + ++N + V DGR IG FD+ +N++L + E
Sbjct: 6 SSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE 47
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIV 314
G + GFD+ +N++LDE+ E S + LG +++GDN+ ++
Sbjct: 41 GRITGFDEYMNLVLDEAEE---VSIKKKTRKPLGRILLKGDNITLM 83
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 32.3 bits (70), Expect = 0.46
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE 233
+S + ++N + V DGR +G FD+ +N++L + E
Sbjct: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 32.3 bits (70), Expect = 0.46
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 108 ASGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE 233
+S + ++N + V DGR +G FD+ +N++L + E
Sbjct: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 32.3 bits (70), Expect = 0.46
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 177 GTLKGFDQTINIILDESHERVFSSTSGVAQVVLGLHIIRGDNVAIV 314
G + GFD+ +N++LDE+ E S + LG +++GDN+ ++
Sbjct: 41 GRITGFDEYMNLVLDEAEE---VSIKKNTRKPLGRILLKGDNITLM 83
>At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related /
snRNP-related contains similarity to snRNP-associated
polypeptide N [Rattus norvegicus] GP|206694|gb|AAA42059
Length = 112
Score = 29.9 bits (64), Expect = 2.4
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +3
Query: 111 SGLENYVNQTVSVITSDGRNFIGTLKGFDQTINIILDESHE-RVF--SSTSGVAQVVLGL 281
S L + + + V DGR F+G D+ NIIL ++ E R SS S Q LG+
Sbjct: 25 SRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPTEQRCLGM 84
Query: 282 HIIRGDNVAIVGQIDESIDSRLDLGNIK 365
I+ + +D SID +L L +K
Sbjct: 85 -ILIPSSCRTSCHVDCSIDEQLSLIQLK 111
>At3g07330.1 68416.m00874 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 682
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -2
Query: 430 FFLITKYLLTSSNVPLVQVVLPL--MFPRSNLLSIDSSICPTIATLSPLIM*SPSTT*AT 257
FFL+ K +L + L V+LPL FP +NL S P I ++ +I S
Sbjct: 485 FFLLRKLILPFYSFTLFCVILPLTMFFPEANLPSWVVCYIPGIMSILNIIPAPRSFPFIV 544
Query: 256 P-LVEENTLS 230
P L+ ENT+S
Sbjct: 545 PYLLFENTMS 554
>At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
similar to phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus] and SEC14 cytosolic
factor (SP:P45816) [Candida lipolytica]
Length = 592
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 153 TSDGRNFIGTLKGFDQTINIILDESHERVFSSTS 254
TSDG FI T++ + + +LD E F++TS
Sbjct: 414 TSDGDKFITTVESIESAQSQLLDADTENTFANTS 447
>At5g49750.1 68418.m06162 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 493
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 288 IRGDNVAIVGQIDESIDSRLDLGNIKGRTTWTNGTLELVNKY 413
IR + + ++G + S S + L ++ + W NGTL+ Y
Sbjct: 376 IRMEGIQLIGPVPISFFSLIRLQSVNLKRNWINGTLDFGTNY 417
>At1g60300.1 68414.m06790 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 322
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 320 LPDYCHIVSSDYVKSKYYLSDATCGGKHSFVRFV*NNIYCL 198
LP Y + +S+ + ++YL + + +V NN+YCL
Sbjct: 175 LPSYGYYLSNTQEEDEFYLDAIMTSEGNEWPSYVTNNVYCL 215
>At5g27920.1 68418.m03354 F-box family protein contains similarity
to leucine-rich repeats containing F-box protein FBL3
GI:5919219 from [Homo sapiens]
Length = 642
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -2
Query: 472 DPRPRXXXXXXXXXFFLITKYLLTSSNVPLVQVVLPLMFPRSNLLSIDSSICPTI 308
DP R F + T+ + V+ + L+F NL S+D S+CP +
Sbjct: 24 DPPCRKTWRLISKDFLRVDSLTRTTIRILRVEFLPTLLFKYPNLSSLDLSVCPKL 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,175
Number of Sequences: 28952
Number of extensions: 251884
Number of successful extensions: 522
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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