Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J10
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)               72   5e-13
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)           40   0.002

>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
          Length = 113

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 46/109 (42%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
 Frame = +2

Query: 80  SKMVXVPKQRRTYXXXXXXXXXXXGITVQKVQGKARC-PXXEXVMIVNSRGYGGQSKPIF 256
           S +V VPKQR+T+               Q   GKA      +        G+GGQ+KP+F
Sbjct: 6   SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVF 65

Query: 257 XXXXXXXXXIVLRS*VC*LQG*DHRVALKRCKHFELGGDKKRKGQMIQF 403
                    IVLR   C       ++ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 66  HKKAKTTKKIVLRM-ECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113


>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
          Length = 39

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +2

Query: 329 RVALKRCKHFELGGDKKRK 385
           ++ LKRCKHFELGGDKKRK
Sbjct: 21  QMPLKRCKHFELGGDKKRK 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,083,962
Number of Sequences: 59808
Number of extensions: 259051
Number of successful extensions: 550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)