Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J10
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    66   4e-11
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    66   4e-11

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 40/106 (37%), Positives = 52/106 (49%)
 Frame = +2

Query: 86  MVXVPKQRRTYXXXXXXXXXXXGITVQKVQGKARCPXXEXVMIVNSRGYGGQSKPIFXXX 265
           MV VPK RRT+            +T  K   +++             G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 266 XXXXXXIVLRS*VC*LQG*DHRVALKRCKHFELGGDKKRKGQMIQF 403
                 IVLR   C       ++ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61  AKTTKKIVLRM-ECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 40/106 (37%), Positives = 52/106 (49%)
 Frame = +2

Query: 86  MVXVPKQRRTYXXXXXXXXXXXGITVQKVQGKARCPXXEXVMIVNSRGYGGQSKPIFXXX 265
           MV VPK RRT+            +T  K   +++             G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 266 XXXXXXIVLRS*VC*LQG*DHRVALKRCKHFELGGDKKRKGQMIQF 403
                 IVLR   C       ++ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61  AKTTKKIVLRM-ECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,381,379
Number of Sequences: 27780
Number of extensions: 204343
Number of successful extensions: 423
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)