Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J10
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)      54   1e-07
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA...    54   1e-07

>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
          Length = 105

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +2

Query: 86  MVXVPKQRRTYXXXXXXXXXXXGITVQKVQGK-ARCPXXEXVMIVNSRGYGGQSKPIFXX 262
           MV +PK + TY               Q  +GK +     +        GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 263 XXXXXXXIVLRS*VC*LQG*DHRVALKRCKHFELGGDKKRKG 388
                  IVLR      +    R  +KRCKHFE+GGDKK KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQR-PIKRCKHFEIGGDKKGKG 101


>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
           similar to ribosomal protein L41 GB:AAA34366 from
           [Candida maltosa]
          Length = 105

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +2

Query: 86  MVXVPKQRRTYXXXXXXXXXXXGITVQKVQGK-ARCPXXEXVMIVNSRGYGGQSKPIFXX 262
           MV +PK + TY               Q  +GK +     +        GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 263 XXXXXXXIVLRS*VC*LQG*DHRVALKRCKHFELGGDKKRKG 388
                  IVLR      +    R  +KRCKHFE+GGDKK KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQR-PIKRCKHFEIGGDKKGKG 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,611,092
Number of Sequences: 28952
Number of extensions: 188420
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)