Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J09
         (950 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132...    31   1.8  
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640...    30   3.1  

>03_01_0164 -
           1326002-1326409,1326410-1326428,1326523-1326647,
           1327482-1327530,1328834-1328855,1328969-1329071
          Length = 241

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 757 PXGGXXPPSPXFFXPXGSFPPXGXPP 834
           P GG  PP P  + P GS+PP G  P
Sbjct: 209 PQGGAYPP-PGSYPPPGSYPPQGSYP 233


>03_05_0688 +
           26762668-26762893,26763027-26763101,26763865-26764032,
           26764983-26765114,26765538-26765677,26765840-26765908,
           26766325-26766435,26766854-26766973,26768223-26768324,
           26769608-26769778,26769865-26769944,26770119-26770182
          Length = 485

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = -1

Query: 848 GGGXRGGXPXGGKDPXGXKXXGEGGXXPPXGXLG 747
           GGG  GG   GG DP G    G GG  P  G  G
Sbjct: 17  GGGGGGGGGGGGVDPAG---GGSGGGGPGMGRRG 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,589
Number of Sequences: 37544
Number of extensions: 162515
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)