BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_J09 (950 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.8 AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.8 AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.8 AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.9 AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.9 >AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform b protein. Length = 518 Score = 29.9 bits (64), Expect = 2.8 Identities = 13/31 (41%), Positives = 13/31 (41%) Frame = +1 Query: 742 GXPKXPXGGXXPPSPXFFXPXGSFPPXGXPP 834 G P P G PP P P PP G PP Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 308 >AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform c protein. Length = 539 Score = 29.9 bits (64), Expect = 2.8 Identities = 13/31 (41%), Positives = 13/31 (41%) Frame = +1 Query: 742 GXPKXPXGGXXPPSPXFFXPXGSFPPXGXPP 834 G P P G PP P P PP G PP Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 329 >AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform a protein. Length = 524 Score = 29.9 bits (64), Expect = 2.8 Identities = 13/31 (41%), Positives = 13/31 (41%) Frame = +1 Query: 742 GXPKXPXGGXXPPSPXFFXPXGSFPPXGXPP 834 G P P G PP P P PP G PP Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 314 >AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical protein Y63D3A.5 protein. Length = 486 Score = 29.1 bits (62), Expect = 4.9 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = +1 Query: 742 GXPKXPXGGXXPPSPX----FFXPXGSFPPXGXPP 834 G P+ GG PP P + P FPP G PP Sbjct: 424 GPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPP 458 >AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical protein F59E12.9 protein. Length = 1621 Score = 29.1 bits (62), Expect = 4.9 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = -1 Query: 845 GGXRGGXPXGGKDPXGXKXXGEGGXXPPXG 756 G RGG P G P G G GG PP G Sbjct: 1445 GSWRGGPPMRGMPPLG-MMRGRGGPPPPRG 1473 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,972,495 Number of Sequences: 27780 Number of extensions: 112107 Number of successful extensions: 366 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 195 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 346 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2465154230 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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