Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J09
         (950 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.8  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.8  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.8  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   4.9  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   4.9  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 742 GXPKXPXGGXXPPSPXFFXPXGSFPPXGXPP 834
           G P  P  G  PP P    P    PP G PP
Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 308


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 742 GXPKXPXGGXXPPSPXFFXPXGSFPPXGXPP 834
           G P  P  G  PP P    P    PP G PP
Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 329


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 742 GXPKXPXGGXXPPSPXFFXPXGSFPPXGXPP 834
           G P  P  G  PP P    P    PP G PP
Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 314


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
 Frame = +1

Query: 742 GXPKXPXGGXXPPSPX----FFXPXGSFPPXGXPP 834
           G P+   GG  PP P     +  P   FPP G PP
Sbjct: 424 GPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPP 458


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -1

Query: 845  GGXRGGXPXGGKDPXGXKXXGEGGXXPPXG 756
            G  RGG P  G  P G    G GG  PP G
Sbjct: 1445 GSWRGGPPMRGMPPLG-MMRGRGGPPPPRG 1473


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,972,495
Number of Sequences: 27780
Number of extensions: 112107
Number of successful extensions: 366
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)