Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J09
         (950 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31750.1 68414.m03895 proline-rich family protein contains pr...    31   0.85 
At5g20230.1 68418.m02408 plastocyanin-like domain-containing pro...    29   6.0  

>At1g31750.1 68414.m03895 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 176

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 757 PXGGXXPPSPXFFXPXGSFPPXGXPP 834
           P G   PP    + P G +PP G PP
Sbjct: 25  PPGAYPPPPQGAYPPPGGYPPQGYPP 50


>At5g20230.1 68418.m02408 plastocyanin-like domain-containing
           protein
          Length = 196

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = -2

Query: 835 GGXXPGGGKTPXGXKXXARGGYXPP--GGVWAP 743
           GG  PG G TP      + GG  PP  GG   P
Sbjct: 130 GGATPGAGATPAPGSTPSTGGTTPPTAGGTTTP 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,595,764
Number of Sequences: 28952
Number of extensions: 88592
Number of successful extensions: 333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2285480280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)