Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J08
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.54 
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)          29   3.8  

>SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 493 LPSAVLLKPVAQPPTKFSLPSFSVV-VLPADVGVGTIVGWVTNSTTPRCTE 344
           LPS   +  V      F +   S+V +LP+D GV T  GW  NS+ P   E
Sbjct: 44  LPSNRTVLDVEDDDGYFIIKRLSIVDMLPSDAGVYTCQGWTYNSSAPSDVE 94


>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
          Length = 966

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 300 AVNRPVYPTEXXXXXXXXXXXXEFVTQPTIVPTPTSAGKTTTEKEGRE 443
           AV R ++PTE            E+  +P +VPT   + +  +E+ GRE
Sbjct: 808 AVPREIFPTEETEVIPTEETE-EYTEEPEVVPTEEPSDEEESEEAGRE 854


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,838
Number of Sequences: 59808
Number of extensions: 202188
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)