Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J04
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    29   1.1  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   3.5  
SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   8.0  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    26   8.0  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   8.0  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    26   8.0  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   8.0  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   8.0  

>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 284 AALKSSMLSLITNKK---SSCGIYTGIHALFSKGDFRSIEGVPLA 409
           ++L SS  SL+  KK   SS  +    HAL    +F + EGVPLA
Sbjct: 33  SSLHSSENSLVNGKKATVSSTNVPKKRHALDDVSNFHNKEGVPLA 77


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 469 TIFVTSSIIWFIIGPIMRNFCQWNSF 392
           T+F  SS+IW +IGP  R F   N++
Sbjct: 617 TVFFNSSVIWGVIGP-KRMFSGKNTY 641


>SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 227 QEARLRCRLEGSVLASPLDAALKSSMLSLITNKKSSCGIYTGIHALFSKGDFR 385
           +EA    R + SV+ SPL+  LK   L L+ N     G  +G  ++ S  DF+
Sbjct: 80  EEADEAPRTQLSVI-SPLEKKLKRDFLFLLLNSNRQPGKSSGKSSIPSPDDFK 131


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 484  WMETSPMLIALIRSSTFAIRK 546
            W++  P LIA I +S+ ++RK
Sbjct: 1737 WLDVIPQLIARIHASSLSVRK 1757


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 642 PXTWSRAYMTCLAEGGYLTIINSQ 713
           P +WS++    LA   YL+I+NSQ
Sbjct: 194 PVSWSKSCTDKLAAKQYLSILNSQ 217


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +1

Query: 37  FPYRLLRFWLICSGQSCKRRXQSLVFVFDSYLFSCRPTVSNMNXYVLQEYQRVVEASGDS 216
           +P   +RFW +    +C  R +S V   +S +   +  V N    +L+ Y  +   +  S
Sbjct: 626 YPQECMRFWYVVKRHNCTVRVESPVNELNSTMEEVK-NVWNSQGEILRLYLEITPENELS 684

Query: 217 SYL 225
           S L
Sbjct: 685 SSL 687


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/65 (21%), Positives = 29/65 (44%)
 Frame = +1

Query: 43  YRLLRFWLICSGQSCKRRXQSLVFVFDSYLFSCRPTVSNMNXYVLQEYQRVVEASGDSSY 222
           +R L    + +G+  +     L+ +  SYL+SC P    +   +++ Y R++    +   
Sbjct: 560 FRQLTIDELFNGEHRENGFPGLITIVRSYLYSCNPDAKTI--CLIERYIRLISQRANGQC 617

Query: 223 LARGS 237
           L   S
Sbjct: 618 LTAAS 622


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 416 PHDWADYEPDNAGGDENCIL 475
           PH W DYE ++    +NC L
Sbjct: 174 PHCWVDYESNDIESVQNCWL 193


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 380 SLLSRITHEYQCRCHTNSSYLLSKTACCF-LKQRPEVKPIQILPNDIL 240
           SLLS  +        T+++  L+K A    +KQRPEV  I I+  ++L
Sbjct: 612 SLLSSSSASIADLSITSATEFLAKVATFLPIKQRPEVSKISIVDENLL 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,240
Number of Sequences: 5004
Number of extensions: 70465
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)