Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J04
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0040 - 13999040-13999179,13999524-13999638,13999759-139998...    29   3.7  
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20...    29   6.4  
01_05_0783 + 25183361-25185628                                         28   8.5  

>03_03_0040 -
           13999040-13999179,13999524-13999638,13999759-13999818,
           14000007-14000060,14000274-14000333,14000418-14000480,
           14000552-14000595,14000671-14000755,14000904-14001028,
           14001368-14001432,14001460-14001518,14001678-14001743,
           14001870-14001935,14002019-14002105,14002168-14002257,
           14002378-14002440,14003153-14003419
          Length = 502

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 214 SSYLARGSIKMSFGRICIGFTSG 282
           S +LA+G I + FGRI +GF++G
Sbjct: 164 SLHLAKGVIMLYFGRILLGFSTG 186


>01_01_0027 -
           205450-206029,206706-207276,207408-207836,208438-208525
          Length = 555

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 522 FQYVCYKKKTSTVAMSSCGSVDSEYTLSKETGNCYXFHKVPXTWSRAYMTCLAE-GGYLT 698
           F ++     T+T + S+    D  + ++     C+ +   P +W R+   C      +L 
Sbjct: 13  FFFILPASLTATASTSTSSCPDG-WQITPALDKCFIYIPTPLSWDRSEALCRNNFTAHLA 71

Query: 699 IINSQQEATFLKELFAKNPA 758
            ++S Q+    K L   +P+
Sbjct: 72  ALSSLQDLNLAKSLCGPSPS 91


>01_05_0783 + 25183361-25185628
          Length = 755

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -3

Query: 616 PVSLLRVYSLSTLPQEDIATVEVFFL*QTYWNVSVQ-LTSAKFPSRVHQDTIFVTSSIIW 440
           P S+  V  + T+    +  V  ++L  +  N+    L  A  P     D +F  +S+IW
Sbjct: 540 PKSMFLVKLVGTVVASTVNLVVAYWLLGSIPNICQDALLPADSPWTCPNDRVFFDASVIW 599

Query: 439 FIIGP 425
            ++GP
Sbjct: 600 GLVGP 604


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,581,021
Number of Sequences: 37544
Number of extensions: 432238
Number of successful extensions: 946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)