Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J04
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   1.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.8  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   8.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 446 YLVHNRPNHEEFLPVELLQLNGSLLSRITHEYQCRCHTNSSYLLS 312
           YL++  P+ E+         NG +L  +  +Y  R H NS   LS
Sbjct: 88  YLMYENPDEEKRYQEHP---NGKILRELQTDYDRRLHDNSPSFLS 129


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 142 DN*TNKNQIQKRDFDXAACKIDHYKLTKNAKVC 44
           DN +N+    +      A   D Y L KN KVC
Sbjct: 407 DNGSNQIAFSRGCSGFVAFNGDQYDLKKNLKVC 439


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 363 YSRKETSVQLKEFHWQKFL 419
           Y+R +T    KEFH+ ++L
Sbjct: 15  YTRYQTLELEKEFHYNRYL 33


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 363 YSRKETSVQLKEFHWQKFL 419
           Y+R +T    KEFH+ ++L
Sbjct: 277 YTRYQTLELEKEFHYNRYL 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,847
Number of Sequences: 438
Number of extensions: 4751
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)