Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J04
         (870 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52310.1 68414.m05902 protein kinase family protein / C-type ...    43   3e-04
At5g64320.1 68418.m08079 pentatricopeptide (PPR) repeat-containi...    29   4.0  
At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge...    29   5.3  
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge...    29   5.3  
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro...    28   7.1  
At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ...    28   7.1  
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    28   7.1  

>At1g52310.1 68414.m05902 protein kinase family protein / C-type
           lectin domain-containing protein contains protein kinase
           domain, Pfam:PF00069, PF00059 Lectin C-type domain
          Length = 552

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 23/86 (26%), Positives = 43/86 (50%)
 Frame = +3

Query: 504 VNCTDTFQYVCYKKKTSTVAMSSCGSVDSEYTLSKETGNCYXFHKVPXTWSRAYMTCLAE 683
           ++C  T     +KK++ TV   SC     ++ +      CY + K   +W ++ M C   
Sbjct: 30  ISCESTQNATDFKKRSQTV---SC---PPDWIIGPNQTKCYAYFKNSTSWEKSEMFCRTY 83

Query: 684 GGYLTIINSQQEATFLKELFAKNPAS 761
           GG+L  + S +E +F+++L   N +S
Sbjct: 84  GGHLASLASSKELSFVQKLCNGNVSS 109


>At5g64320.1 68418.m08079 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 730

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 19  LTYXGAFPYRLLRFWLICSGQSCKRRXQSLVFVFDSYLFSCRPTVSNMNXYVLQ--EYQR 192
           +T  G  P  ++   LI S   C R  ++L  + + +L  C P     N  +L   ++ R
Sbjct: 243 MTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDR 302

Query: 193 VVEAS 207
           + EA+
Sbjct: 303 INEAA 307


>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 389

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +1

Query: 148 TVSNMNXYVLQEYQRVVEASGDSSYLARGSIKMSFGRICIGFTSGRCFKKQHAVFDNK*E 327
           T++ +  + L +Y RVV    D+ +L +       GR C  F +   F     V     E
Sbjct: 38  TLNKLYAWALSDYDRVVMLDADNLFLKKADELFQCGRFCAVFINPCIFHTGLFVLQPSVE 97

Query: 328 EFVWHLH 348
            F   LH
Sbjct: 98  VFKDMLH 104


>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 497

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +1

Query: 148 TVSNMNXYVLQEYQRVVEASGDSSYLARGSIKMSFGRICIGFTSGRCFKKQHAVFDNK*E 327
           T++ +  + L +Y RVV    D+ +L +       GR C  F +   F     V     E
Sbjct: 146 TLNKLYAWALSDYDRVVMLDADNLFLKKADELFQCGRFCAVFINPCIFHTGLFVLQPSVE 205

Query: 328 EFVWHLH 348
            F   LH
Sbjct: 206 VFKDMLH 212


>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 755

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 616 PVSLLRVYSLSTLPQEDIATVEVFFL*QTYWNV-SVQLTSAKFPSRVHQDTIFVTSSIIW 440
           P S+  V  ++T+    +     ++L  +  N+ +V L     P     D +F  +SIIW
Sbjct: 542 PRSMFIVQLVATVVASTVCFGTTWWLITSVENICNVDLLPVGSPWTCPGDEVFYNASIIW 601

Query: 439 FIIGP 425
            +IGP
Sbjct: 602 GVIGP 606


>At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 586

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -2

Query: 620 ISRLFAESIFTVNTATGRHSNS*SLFLIANVLERISAINIGEVSIQGTSGYNFRH 456
           +  L  ES  T++ A G H +   ++    V+  I A+++G+V+ + + GY   H
Sbjct: 278 VKLLLTESDITLDQANGLHYSV--VYSDPKVVAEILALDMGDVNYRNSRGYTVLH 330


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 616 PVSLLRVYSLSTLPQEDIATVEVFFL*QTYWNV-SVQLTSAKFPSRVHQDTIFVTSSIIW 440
           P S+  V  ++T+    ++    ++L  +  N+ +  +     P     D +F  +SIIW
Sbjct: 540 PRSMFIVQLVATIVASTVSFGTTWWLLSSVENICNTDMLPKSSPWTCPGDVVFYNASIIW 599

Query: 439 FIIGP 425
            IIGP
Sbjct: 600 GIIGP 604


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,625,111
Number of Sequences: 28952
Number of extensions: 358964
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)