Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J03
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                        58   1e-08
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                        58   1e-08
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        42   6e-04

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 449 EFRLXDVDNRIIXPINXQXSNYNXSHRCNSXMNNSFIRCXXDANPGRLNQQLLY*STWN- 625
           +FRL +VDNR++ PIN        +           +    DA PGRLNQ   +      
Sbjct: 142 DFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGV 201

Query: 626 FFGQCSEIXGANHSFIPL 679
           F+GQCSEI GANHSF+P+
Sbjct: 202 FYGQCSEICGANHSFMPI 219



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
 Frame = +3

Query: 336 VTLXSIGHX*Y*RYEYSDFNN--XEXDSYIIPSX*X*K*MNSDYXM*II--VLFXQ*TXN 503
           +T+ ++GH  Y  YEYSD+ +   E DSY++P+         D+ +  +   L      +
Sbjct: 103 LTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTT---DLNQGDFRLLEVDNRLVVPINTH 159

Query: 504 XRIIXTATDVIHX*TIPSLGVXLMLIQVD*IN--NFFINRPGIF 629
            R++ TA DVIH   +P+L V +  +    +N   FFI RPG+F
Sbjct: 160 VRVLITAADVIHSFAVPALAVKMDAVP-GRLNQTGFFIKRPGVF 202


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 449 EFRLXDVDNRIIXPINXQXSNYNXSHRCNSXMNNSFIRCXXDANPGRLNQQLLY*STWN- 625
           +FRL +VDNR++ PIN        +           +    DA PGRLNQ   +      
Sbjct: 142 DFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGV 201

Query: 626 FFGQCSEIXGANHSFIPL 679
           F+GQCSEI GANHSF+P+
Sbjct: 202 FYGQCSEICGANHSFMPI 219



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
 Frame = +3

Query: 336 VTLXSIGHX*Y*RYEYSDFNN--XEXDSYIIPSX*X*K*MNSDYXM*II--VLFXQ*TXN 503
           +T+ ++GH  Y  YEYSD+ +   E DSY++P+         D+ +  +   L      +
Sbjct: 103 LTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTT---DLNQGDFRLLEVDNRLVVPINTH 159

Query: 504 XRIIXTATDVIHX*TIPSLGVXLMLIQVD*IN--NFFINRPGIF 629
            R++ TA DVIH   +P+L V +  +    +N   FFI RPG+F
Sbjct: 160 VRVLITAADVIHSFAVPALAVKMDAVP-GRLNQTGFFIKRPGVF 202


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
 Frame = +3

Query: 336 VTLXSIGHX*Y*RYEYSDFNN--XEXDSYIIPSX*X*K*MNSDYXM*II--VLFXQ*TXN 503
           +T+ ++GH  Y  YEYSD+ +   E DSY++P+         D+ +  +   L      +
Sbjct: 103 LTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTT---DLNQGDFRLLEVDNRLVVPINTH 159

Query: 504 XRIIXTATDVIHX*TIPSLGVXLMLIQVD*IN--NFFINRPGIFLVNVQKXVELIIVL 671
            R++ TA DVIH   +P+L V +  +    +N   FFI +   FL ++ + +   I+L
Sbjct: 160 VRVLITAADVIHSFAVPALAVKMDAVP-GRLNQTGFFIKKTWSFLRSMFRDLRGPIIL 216



 Score = 34.7 bits (76), Expect = 0.095
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 449 EFRLXDVDNRIIXPINXQXSNYNXSHRCNSXMNNSFIRCXXDANPGRLNQQ-LLY*STWN 625
           +FRL +VDNR++ PIN        +           +    DA PGRLNQ       TW+
Sbjct: 142 DFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWS 201

Query: 626 F 628
           F
Sbjct: 202 F 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,683,536
Number of Sequences: 59808
Number of extensions: 181028
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)