Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J02
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   2.7  
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    27   3.6  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    26   8.4  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 183 SPSQLRNKXLGSCRILLQQAWLNPQV-RFEHMQNSASESMLMNIGF 317
           S S+L  + + + R +   AW  P + +  H++N+   SML  IGF
Sbjct: 429 SRSKLMTEIINNIRSIKLYAWETPFLQKLLHIRNTKELSMLKKIGF 474


>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +1

Query: 238 RHGLIRKYGLNICR 279
           R GLIRKYGLNI R
Sbjct: 27  RLGLIRKYGLNISR 40


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 107 SLICCSFR--ASTISFLSNGPTQIFGLLXLAAPEQGSRXMP 223
           ++I CS    A+ I  L +GP    G L L A E GS  MP
Sbjct: 299 NVIACSLMKIANDIRQLGSGPRCGLGELILPANEPGSSIMP 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,802
Number of Sequences: 5004
Number of extensions: 38765
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)