BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_J02 (900 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 35 0.091 Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical p... 28 7.9 Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical pr... 28 7.9 Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p... 28 7.9 U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. 28 7.9 U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein. 28 7.9 U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated p... 28 7.9 AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic catio... 28 7.9 >U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein, small subunitprotein 29 protein. Length = 56 Score = 34.7 bits (76), Expect = 0.091 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = +1 Query: 229 CSNRHGLIRKYGLNICR 279 C+ HGLIRKYGL++CR Sbjct: 24 CAGHHGLIRKYGLDLCR 40 >Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical protein F52F12.1a protein. Length = 585 Score = 28.3 bits (60), Expect = 7.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +2 Query: 599 IAFILCXRFRGRCGXVFSALM 661 I FI+C F G G +FS LM Sbjct: 225 IPFIICMEFMGNSGRIFSGLM 245 >Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical protein F52F12.1b protein. Length = 568 Score = 28.3 bits (60), Expect = 7.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +2 Query: 599 IAFILCXRFRGRCGXVFSALM 661 I FI+C F G G +FS LM Sbjct: 208 IPFIICMEFMGNSGRIFSGLM 228 >Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical protein F43G9.6 protein. Length = 2034 Score = 28.3 bits (60), Expect = 7.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 118 TNERPHGKRANWNEKNDQVXKSPK 47 T E PH + N +KND V K PK Sbjct: 1910 TEEYPHEEPQNAKKKNDDVGKDPK 1933 >U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. Length = 777 Score = 28.3 bits (60), Expect = 7.9 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = +2 Query: 92 PLAVWSLICCSFRASTISFLSNGPTQIFGLLXLAAPE-QGSRXMPNPAPTGMA 247 PL W+LIC S R TI L N G + PE SR P P+ A Sbjct: 3 PLLTWNLICVSSRWYTILCLKNKVKFWLGTRLVHEPESMESRSSPYIRPSPYA 55 >U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein. Length = 2034 Score = 28.3 bits (60), Expect = 7.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 118 TNERPHGKRANWNEKNDQVXKSPK 47 T E PH + N +KND V K PK Sbjct: 1910 TEEYPHEEPQNAKKKNDDVGKDPK 1933 >U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated protein 8 protein. Length = 777 Score = 28.3 bits (60), Expect = 7.9 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = +2 Query: 92 PLAVWSLICCSFRASTISFLSNGPTQIFGLLXLAAPE-QGSRXMPNPAPTGMA 247 PL W+LIC S R TI L N G + PE SR P P+ A Sbjct: 3 PLLTWNLICVSSRWYTILCLKNKVKFWLGTRLVHEPESMESRSSPYIRPSPYA 55 >AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic cation transporter 1 protein. Length = 568 Score = 28.3 bits (60), Expect = 7.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +2 Query: 599 IAFILCXRFRGRCGXVFSALM 661 I FI+C F G G +FS LM Sbjct: 208 IPFIICMEFMGNSGRIFSGLM 228 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,020,499 Number of Sequences: 27780 Number of extensions: 232275 Number of successful extensions: 587 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 559 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 587 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2286823924 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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