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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J02
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    35   0.091
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    28   7.9  
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    28   7.9  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        28   7.9  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    28   7.9  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    28   7.9  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 34.7 bits (76), Expect = 0.091
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 229 CSNRHGLIRKYGLNICR 279
           C+  HGLIRKYGL++CR
Sbjct: 24  CAGHHGLIRKYGLDLCR 40


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 599 IAFILCXRFRGRCGXVFSALM 661
           I FI+C  F G  G +FS LM
Sbjct: 225 IPFIICMEFMGNSGRIFSGLM 245


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 599 IAFILCXRFRGRCGXVFSALM 661
           I FI+C  F G  G +FS LM
Sbjct: 208 IPFIICMEFMGNSGRIFSGLM 228


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 118  TNERPHGKRANWNEKNDQVXKSPK 47
            T E PH +  N  +KND V K PK
Sbjct: 1910 TEEYPHEEPQNAKKKNDDVGKDPK 1933


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 92  PLAVWSLICCSFRASTISFLSNGPTQIFGLLXLAAPE-QGSRXMPNPAPTGMA 247
           PL  W+LIC S R  TI  L N      G   +  PE   SR  P   P+  A
Sbjct: 3   PLLTWNLICVSSRWYTILCLKNKVKFWLGTRLVHEPESMESRSSPYIRPSPYA 55


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 118  TNERPHGKRANWNEKNDQVXKSPK 47
            T E PH +  N  +KND V K PK
Sbjct: 1910 TEEYPHEEPQNAKKKNDDVGKDPK 1933


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 92  PLAVWSLICCSFRASTISFLSNGPTQIFGLLXLAAPE-QGSRXMPNPAPTGMA 247
           PL  W+LIC S R  TI  L N      G   +  PE   SR  P   P+  A
Sbjct: 3   PLLTWNLICVSSRWYTILCLKNKVKFWLGTRLVHEPESMESRSSPYIRPSPYA 55


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 599 IAFILCXRFRGRCGXVFSALM 661
           I FI+C  F G  G +FS LM
Sbjct: 208 IPFIICMEFMGNSGRIFSGLM 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,499
Number of Sequences: 27780
Number of extensions: 232275
Number of successful extensions: 587
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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