Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J02
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.71 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   5.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   5.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   5.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   5.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   5.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   5.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 192 QLRNKXLGSCRILLQQAWLNPQVRF--EHMQNSASESMLMNIGF 317
           +++NK  GS + LLQ  WL+P+      H   S +  +   IGF
Sbjct: 328 KVKNKKAGS-KHLLQNTWLDPEYPMIRVHKTQSQTIDIYSRIGF 370


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 179 DQRFAXAHLKEMKWWTRETSNK*ETTRQEG 90
           D+++   ++K  +WW+R      +TT + G
Sbjct: 32  DEKWVVNNIKRKRWWSRPREPA-QTTSKAG 60


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 228 LLQQAWLNPQVRFEH 272
           LLQQ W +P++R+ +
Sbjct: 112 LLQQQWYDPRLRYSN 126


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 228 LLQQAWLNPQVRFEH 272
           LLQQ W +P++R+ +
Sbjct: 112 LLQQQWYDPRLRYSN 126


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 228 LLQQAWLNPQVRFEH 272
           LLQQ W +P++R+ +
Sbjct: 163 LLQQQWYDPRLRYSN 177


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 228 LLQQAWLNPQVRFEH 272
           LLQQ W +P++R+ +
Sbjct: 112 LLQQQWYDPRLRYSN 126


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 83  PVRPLAVWSLICCSFRASTI 142
           PVRP  V    CC  RA+ I
Sbjct: 338 PVRPATVQYDTCCQGRATAI 357


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 103 HGKRANWNEKNDQVXKSPKXERKAPS 26
           +G+R  WN  N  V KS +   + P+
Sbjct: 834 YGERPYWNWSNQDVIKSIEKGYRLPA 859


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,429
Number of Sequences: 438
Number of extensions: 2902
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)