Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_J02
         (900 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)            37   0.016
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo...    37   0.016
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo...    37   0.016
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    29   5.6  
At3g03420.1 68416.m00340 Ku70-binding family protein similar to ...    28   9.7  

>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
          Length = 56

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 229 CSNRHGLIRKYGLNICR 279
           C N HGLIRKYGLN CR
Sbjct: 24  CGNSHGLIRKYGLNCCR 40


>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
           ribosomal protein S29, rat, PIR:S30298
          Length = 56

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 229 CSNRHGLIRKYGLNICR 279
           C N HGLIRKYGLN CR
Sbjct: 24  CGNSHGLIRKYGLNCCR 40


>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
           ribosomal protein S29, rat, PIR:S30298
          Length = 56

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 229 CSNRHGLIRKYGLNICR 279
           C N HGLIRKYGLN CR
Sbjct: 24  CGNSHGLIRKYGLNCCR 40


>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
           protein ESTs gb|F20110 and gb|F20109 come from this
           gene; contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 534 FTNKAFFSLHFSCGLS 487
           + N+A F LHF+CGLS
Sbjct: 904 YVNRALFLLHFTCGLS 919


>At3g03420.1 68416.m00340 Ku70-binding family protein similar to
           Ku70-binding protein GB:AAD31085 GI:4867999 [Homo
           sapiens]; contains Prosite PS00142: Neutral zinc
           metallopeptidases, zinc-binding region signature
          Length = 194

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 180 FSPSQLRNKXLGSCRILLQQAWLNPQVRF--EHMQNS 284
           F+P   R K +  C+ ++++++ NP V+F  E M+ S
Sbjct: 13  FNPGARRGKSIDECQDMIRRSFRNPIVKFLMEQMEKS 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,284
Number of Sequences: 28952
Number of extensions: 214799
Number of successful extensions: 443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)