Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I23
         (1000 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...    29   3.9  
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor...    29   3.9  
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch...    29   3.9  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    28   9.1  

>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 129 NCSNQKVKSRRGLRVHVKSRLGD 197
           NC N K+K  + +R +++SRLGD
Sbjct: 82  NCPNDKIKMNKVVRNNLRSRLGD 104


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 129 NCSNQKVKSRRGLRVHVKSRLGD 197
           NC N K+K  + +R +++SRLGD
Sbjct: 82  NCPNDKIKMNKVVRNNLRSRLGD 104


>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform a protein.
          Length = 1280

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 174 GPVSPVWI*LSDCYNCFMFGLVDNKSRKRS 85
           G  SP WI  S+C NC +F ++  +   R+
Sbjct: 532 GKTSPYWIPDSECPNCMLFTIITRRHHCRA 561


>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
           protein protein.
          Length = 1280

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 174 GPVSPVWI*LSDCYNCFMFGLVDNKSRKRS 85
           G  SP WI  S+C NC +F ++  +   R+
Sbjct: 532 GKTSPYWIPDSECPNCMLFTIITRRHHCRA 561


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1

Query: 568 PPRVPILLTPFXNVIFFPPKKVXGILQLNLKLPLPVGEPPV*MGEGEQ*PP 416
           PP  P+L     +    PP  + G+  L+   P P   PPV M  G   PP
Sbjct: 504 PPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPP 554


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 574 GSPPRVPILLTPFXNVIFFPPKKVXGILQLNLKLP-LPVGEPP 449
           GSPP++P+ L    N+     +    I  L+ +LP +P  +PP
Sbjct: 263 GSPPQIPVALEDHINIPSTSQENPRDIRSLSHQLPMIPPQQPP 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,892,711
Number of Sequences: 27780
Number of extensions: 368917
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2615559500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)